SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27460

Length: 1043 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27460

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os01g0215700 protein n=4 Tax=Oryza sativa RepID=Q0JPL8_ORYSJ	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	61%
Blast2go	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	0.0	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWB0

Fln msg: your sequence is shorter than subject: 296 - 388

Fln protein: VVDYIAQASGMPLLDPFLGKTSNFTSGINFAVAGATALDPAFFTARDIGPLWTSLSLDTQIFWFLGYKTKFCATYAGDCEEYFANSLFLMGEIGGNDYNYPFLLRKSMEEVDTFIPLVVNKIRSALQALITLGSAKKILVQNNLPIGCSPSYLTFYATGEELDTMGCMPRFNAFAKRSNDLLRASVAELQVLNPDVKIVFADYYGAALNVLQSPQSFGLNKDVLQACCGTGGAYNFNPLMPCGENTGLCMHPEKYFNWDGIHLTDAAYKAITNLFVNGDFTSPPLQTLCSTTKLD*

Protein Length: 297

Fln nts: GTTGTGGATTATATTGCTCAAGCTTCAGGGATGCCTCTTTTGGATCCATTTCTGGGTAAAACTTCAAACTTCACGAGCGGTATCAATTTTGCAGTGGCTGGAGCCACTGCTTTAGACCCTGCTTTCTTCACAGCCAGGGACATAGGGCCACTTTGGACTTCCTTGTCACTAGATACACAAATATTTTGGTTTTTGGGATACAAAACTAAATTTTGTGCAACTTATGCAGGAGATTGTGAGGAGTATTTTGCAAATTCGTTGTTTCTGATGGGGGAGATTGGTGGAAATGATTACAACTATCCCTTCCTTCTTCGTAAATCAATGGAGGAAGTTGACACATTCATCCCTCTGGTGGTAAATAAGATTAGATCAGCATTACAGGCACTGATCACCTTAGGTAGTGCAAAGAAAATTTTAGTCCAAAACAACTTACCAATTGGTTGTTCGCCGTCATATTTAACGTTTTATGCAACTGGAGAAGAACTAGACACAATGGGATGTATGCCAAGGTTTAATGCTTTCGCCAAAAGGAGTAATGATTTGCTTAGAGCTTCAGTGGCTGAATTGCAAGTTCTAAATCCAGATGTCAAAATTGTGTTTGCTGATTACTATGGAGCAGCACTCAATGTTTTACAATCTCCCCAGTCCTTTGGTTTGAACAAAGATGTCCTACAAGCTTGTTGTGGAACAGGTGGAGCATATAATTTTAATCCGTTaATGCCATGTGGAGAAAATACAGGATTATGCATGCATCCTGAGAAATATTTTAATTGGGATGGGATTCATTTAACAGATGCAGCATATAAAGCGATAACAAATTTGTTTGTCAACGGCGACTTCACAAGCCCGCCTCTTCAAACACTATGCTCCACCACTAAACTAGACTAA___GATAAATTCTAATTAACATATTTACTTTATTcGATTATATAAATTATTTTTATATTATGGACATCCTCAATTAAATGAGGCTCCTTCATTTTGTTGTTGTGTTATATTTATTGATAACATCATTCTTCTTATTAATATATTTTTTTAATAAATTA

Fln Alignment:

sp_v1.1_unigene27460___VVDYIAQASGMPLLDPFLGKTSNFTSGINFAVAGATALDPAFFTARDIGPLWTSLSLDTQIFWFLGYKTKFCATYAGDCEEYFANSLFLMGEIGGNDYNYPFLLRKSMEEVDTFIPLVVNKIRSALQALITLGSAKKILVQNNLPIGCSPSYLTFYATGE--ELDTMGCMPRFNAFAKRSNDLLRASVAELQVLNPDVKIVFADYYGAALNVLQSPQSFGLNKDVLQACCGTGGAYNFNPLMPCGENTGLCMHPEKYFNWDGIHLTDAAYKAITNLFVNGDFTSPPL
A9NWB0_______________IVDFIAQAYGFQFLPPFLDKHADFSNGANFAVAGATAMDASFFEERHIEPIFTNFSLDTQIEWFKTFKENYCYG-TPDCADHFENALFLIGEIGGNDYNYPFAQGRSLEEVSTFVPLIVQKIKGAIEELIDEG-AKKFFVQGNLPIGCSPFYLTTQQTNSSADLDHMGCLVKFNNFSQYSNLHIRNMLLDVQGKHQNISIIYADYFSAALKVLSNPKQYGLQRNVLRVCCGRGGKYNFSPPTSCSPNVSSCLNPEQYFNWDGVHLTETAYRTIAKMFVDGKFTTPKI

SNPs (tot: 5)

Position	A %	C %	G %	Probability
450	20		80	0.995493
462		16	83	0.994512
581		66	33	1.0
717	50		50	1.0
920	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain