SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27459

Length: 533 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene27459
TTATTCCTATCCTCTCCTCCTTGTTCAGGTAACATTTCTCAAATGTGGCGGAGTATCATTAGGTACGAGGATACACCACATTCTGGGCGATGGATATGCATGTTTGCAATTTTTCAATGCTTGGTCAGCTGTAGCCCGTGGAACCAATGTTATGGAACCTCCATATCTTGACAGACGTATTTTAAGAGCCAGTAATACTCCCAATCCAAAGTTTCGACATATAGAGTATGAACAACCTTCACCAGACAAAAATGGTAAAAGAAATGATGATCAAGACTCAATTGGTATCTTTAAAATTACAACAGACCAATTAGATAACCTTAAGGCCAAGGCCATACATGAGGATGGCAATGAGGTAAAATATACTACTTATGAAACGCTATCTGGACACATTTGGAGATGCGTTTGTAAGGCTACAAATCTCAATGAAGATCAAGAAAGCAAAATGTATGTTGCTGTAGACAGCCGTAAGCGACTGCAGCCACCTCTTCCCCTTAATTATTTTGGAAATGCCATTTTTACTGCTTCGCCTA

Ace file of the UniGene sp_v1.1_unigene27459

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase n=2 Tax=Pinaceae RepID=A6Y879_PINRA	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	hydroxycinnamoyl- shikimate quinate hydroxycinnamoyltransferase	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	0.0	68%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNE0

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 177 - 433

Fln protein: YSYPLLLVQVTFLKCGGVSLGTRIHHILGDGYACLQFFNAWSAVARGTNVMEPPYLDRRILRASNTPNPKFRHIEYEQPSPDKNGKRNDDQDSIGIFKITTDQLDNLKAKAIHEDGNEVKYTTYETLSGHIWRCVCKATNLNEDQESKMYVAVDSRKRLQPPLPLNYFGNAIFTASP

Protein Length: 178

Fln nts: TTATTCCTATCCTCTCCTCCTTGTTCAGGTAACATTTCTCAAATGTGGCGGAGTATCATTAGGTACGAGGATACACCACATTCTGGGCGATGGATATGCATGTTTGCAATTTTTCAATGCTTGGTCAGCTGTAGCCCGTGGAACCAATGTTATGGAACCTCCATATCTTGACAGACGTATTTTAAGAGCCAGTAATACTCCCAATCCAAAGTTTCGACATATAGAGTATGAACAACCTTCACCAGACAAAAATGGTAAAAGAAATGATGATCAAGACTCAATTGGTATCTTTAAAATTACAACAGACCAATTAGATAACCTTAAGGCCAAGGCCATACATGAGGATGGCAATGAGGTAAAATATACTACTTATGAAACGCTATCTGGACACATTTGGAGATGCGTTTGTAAGGCTACAAATCTCAATGAAGATCAAGAAAGCAAAATGTATGTTGCTGTAGACAGCCGTAAGCGACTGCAGCCACCTCTTCCCCTTAATTATTTTGGAAATGCCATTTTTACTGCTTCGCCTA

Fln Alignment:

sp_v1.1_unigene27459___SYPLLLVQVTFLKCGGVSLGTRIHHILGDGYACLQFFNAWSAVARGTNVMEPPYLDRRILRASNTPNPKFRHIEYEQPSPDK------NGKRNDDQDSIGIFKITTDQLDNLKAKAIHEDGNEVKYTTYETLSGHIWRCVCKATNLNEDQESKMYVAVDSRKRLQPPLPLNYFGNAIFTASP
B8LNE0_______________SYALLVLQVTFFKCGGVSLGVGMQHHVADGYAGLHFINTWSDVARGLDIALPPFIDRTLLRARNPPTPKFQHIEYQQPPPLKDTSGIMNGEKND--FSVAIFKLTKEQLDILKGKA-RENGNKVSYSSYEMLSGHIWRCACKARNLTEDQGTKLYIATDGRSRLRPSLPPGYFGNVIFTTTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain