SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27412

Length: 2093 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27412
TGGTGCTGGGGCCACTGATGACAAGGAAAATGAAAGTCTTTTGATTGTTGGGGAACTAAATGCAGCACTTGATCCATTATGGCAAGGATTGAGTAGTTGTATAAGTGAAATTGAGCTGCGATTGGGAAATATTTCTGATTTCTCTTCTGCATCAAGTAGGAATGCAGCAGCGACTAACATGGCACCACCTCTTCCACCTGGTACCCAAAGGGTTTTGCCATTTATTGAGGCATTTTTTGTTTTATGTGAGAAGTTGCAGCTAGGACCCACTGCTGTGCAACATGATCCTGATGATGCCAGTGTGAGTGATGTTACACAACAAAGAAGAGCAGAGGCAGGTATGACATTTGTAAAGTTTGCGGAAAAACATCGACGGCTTCTGAATGCTTTTGTCCGGCAGAATCCGGGGTTATTAGAGAAGTCTCTTTCTCTTATGCACAAGACACCTCGTCTAATTGACTTTGACAACAAGCGATCATTTTTCCGCTCTCGGATTAGACAACAGAATGAGCAGCACAACTATAATCCACTCCGTATTTGTGTTCGCCGAACATATGTCTTAGAAGATTCTTACAATCAATTACGGATGCGTTCTGTAGATGACATTAAAGGGCGCTTGACTGTGCAATTTCAAGGAGAGGAGGGCATTGATGCTGGTGGTTTAACAAGAGAATGGTACCAACTATTGTCCAGGGTGATATTTGACAAGGGTGCATTGCTATTCACAACTGTCGGGAATCAGTCAACATTTCAGCCTAATCCAAATTCTGTTCTTCAAACAGAACACCTCTCATACTTCAAGTTTGTTGGGCGGGTGGTTGCTAAAGCATTATTTGATGGTCAACTACTGGATGTCTATTTTACCCGATCTTTTTACAAACACATACTTGGAGCAAAAGTTACATACCATGATATTGAGGCTGTTGATCCAGATTACTATAAGAATCTGAAATGGATGCTTGAGAATGATGTAAGTGACATCCTTGATCTCACTTTCAGTAGAGATGCAGATGAGGAAAAGCACATCCTGTACGAGAAGACTGAGGTAACCGACTATGAGCTTATCCCTGGTGGAAGAAATATCCGTGTCACAGAAGAAAACAAGCACGAATATGTGGATCTTGTTGCAGAGCATACGCTGACCACAGCCATTCGCCCTCAAATAAATGCTTTCCTGGAAGGATTCAATGAGTTGATACCAAGGCATCTTATCTCAATATTCAATGACAAAGAACTTGAACTCTTGATTAGTGGACTACCTGAAATTGACCTTGATGATCTGAAGGCCAGTACAGAGTACACAGGATACACTGCAGCATCTCCTTTAATACAGTGGTTTTGGGAGGTTGTGCAAGGATTTAGCAAGGAGGACATGGCACGATTGTTGCAGTTTGTCACAGGAACATCAAAGGTTCCATTAGAAGGGTTTAAAGCTCTTCAAGGTATATCTGGTCCTCAAAGATTTCAAATTCACAAAGCATATGGAGCTCCAGAGCGTCTGCCATCAGCTCATACCTGTTTCAATCAGTTAGACCTTCCTGATTATTCTTCAAAGGAACAGCTTAAGGAACGATTGTTGTTGGCCATTCATGAAGCTAGTGAAGGCTTTGGCTTTGGTTGATTTTTTGAAACAACAATTTTATCACACTAATGTTTCTTGCAAATATAGCTGCAGGACACTGCCAAATATCCTTCTGTATTGATTTGGAATCTGCCATATAGTTTCAAGCCAATCTCTGAGGGCTAATACGAAAGTCTATACTGTTGATCTGTACAAATCTATATTTTGCATGTGGAAATCAATTTTCTTGTTCTGGTAATGCTTTAAGCAATTGCTGTGATTATTGATATTGTTGGGAATAGCCCCTACAAGCGAATTAAGGGGTCAAGCTGTATTATTGATTTTGCCTCTTATTCGGTGTTATATGGTCACACCCTGATTAATGTCTAGGACGTGTACAATAAGATAGAATCTGAAAGTTTGGTCAGACTGCTGGATATGTAACTACAAGCAAACCAATTTTATCATCATTTGTTGGGAATTTAATGGAGGTGACCATCAATTGAAGGTTGTTCAGCTGGGGGTTNAATTT

Ace file of the UniGene sp_v1.1_unigene27412

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to E3 ubiquitin-protein ligase UPL1; K10592 E3 ubiquitin-protein ligase HUWE1 [EC:6.3.2.19]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	e3 ubiquitin protein ligase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	83%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%
Blast2go	cytosol	GO:0005829	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HECT	IPR000569	-	0.0	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKQ9

Fln msg: your sequence is shorter than subject: 540 - 1032

Fln protein: GAGATDDKENESLLIVGELNAALDPLWQGLSSCISEIELRLGNISDFSSASSRNAAATNMAPPLPPGTQRVLPFIEAFFVLCEKLQLGPTAVQHDPDDASVSDVTQQRRAEAGMTFVKFAEKHRRLLNAFVRQNPGLLEKSLSLMHKTPRLIDFDNKRSFFRSRIRQQNEQHNYNPLRICVRRTYVLEDSYNQLRMRSVDDIKGRLTVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNQSTFQPNPNSVLQTEHLSYFKFVGRVVAKALFDGQLLDVYFTRSFYKHILGAKVTYHDIEAVDPDYYKNLKWMLENDVSDILDLTFSRDADEEKHILYEKTEVTDYELIPGGRNIRVTEENKHEYVDLVAEHTLTTAIRPQINAFLEGFNELIPRHLISIFNDKELELLISGLPEIDLDDLKASTEYTGYTAASPLIQWFWEVVQGFSKEDMARLLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPERLPSAHTCFNQLDLPDYSSKEQLKERLLLAIHEASEGFGFG*

Protein Length: 541

Fln nts: TGGTGCTGGGGCCACTGATGACAAGGAAAATGAAAGTCTTTTGATTGTTGGGGAACTAAATGCAGCACTTGATCCATTATGGCAAGGATTGAGTAGTTGTATAAGTGAAATTGAGCTGCGATTGGGAAATATTTCTGATTTCTCTTCTGCATCAAGTAGGAATGCAGCAGCGACTAACATGGCACCACCTCTTCCACCTGGTACCCAAAGGGTTTTGCCATTTATTGAGGCATTTTTTGTTTTATGTGAGAAGTTGCAGCTAGGACCCACTGCTGTGCAACATGATCCTGATGATGCCAGTGTGAGTGATGTTACACAACAAAGAAGAGCAGAGGCAGGTATGACATTTGTAAAGTTTGCGGAAAAACATCGACGGCTTCTGAATGCTTTTGTCCGGCAGAATCCGGGGTTATTAGAGAAGTCTCTTTCTCTTATGCACAAGACACCTCGTCTAATTGACTTTGACAACAAGCGATCATTTTTCCGCTCTCGGATTAGACAACAGAATGAGCAGCACAACTATAATCCACTCCGTATTTGTGTTCGCCGAACATATGTCTTAGAAGATTCTTACAATCAATTACGGATGCGTTCTGTAGATGACATTAAAGGGCGCTTGACTGTGCAATTTCAAGGAGAGGAGGGCATTGATGCTGGTGGTTTAACAAGAGAATGGTACCAACTATTGTCCAGGGTGATATTTGACAAGGGTGCATTGCTATTCACAACTGTCGGGAATCAGTCAACATTTCAGCCTAATCCAAATTCTGTTCTTCAAACAGAACACCTCTCATACTTCAAGTTTGTTGGGCGGGTGGTTGCTAAAGCATTATTTGATGGTCAACTACTGGATGTCTATTTTACCCGATCTTTTTACAAACACATACTTGGAGCAAAAGTTACATACCATGATATTGAGGCTGTTGATCCAGATTACTATAAGAATCTGAAATGGATGCTTGAGAATGATGTAAGTGACATCCTTGATCTCACTTTCAGTAGAGATGCAGATGAGGAAAAGCACATCCTGTACGAGAAGACTGAGGTAACCGACTATGAGCTTATCCCTGGTGGAAGAAATATCCGTGTCACAGAAGAAAACAAGCACGAATATGTGGATCTTGTTGCAGAGCATACGCTGACCACAGCCATTCGCCCTCAAATAAATGCTTTCCTGGAAGGATTCAATGAGTTGATACCAAGGCATCTTATCTCAATATTCAATGACAAAGAACTTGAACTCTTGATTAGTGGACTACCTGAAATTGACCTTGATGATCTGAAGGCCAGTACAGAGTACACAGGATACACTGCAGCATCTCCTTTAATACAGTGGTTTTGGGAGGTTGTGCAAGGATTTAGCAAGGAGGACATGGCACGATTGTTGCAGTTTGTCACAGGAACATCAAAGGTTCCATTAGAAGGGTTTAAAGCTCTTCAAGGTATATCTGGTCCTCAAAGATTTCAAATTCACAAAGCATATGGAGCTCCAGAGCGTCTGCCATCAGCTCATACCTGTTTCAATCAGTTAGACCTTCCTGATTATTCTTCAAAGGAACAGCTTAAGGAACGATTGTTGTTGGCCATTCATGAAGCTAGTGAAGGCTTTGGCTTTGGTTGA___TTTTTTGAAACAACAATTTTATCACACTAATGTTTCTTGCAAATATAGCTGCAGGACACTGCCAAATATCCTTCTGTATTGATTTGGAATCTGCCATATAGTTTCAAGCCAATCTCTGAGGGCTAATACGAAAGTCTATACTGTTGATCTGTACAAATCTATATTTTGCATGTGGAAATCAATTTTCTTGTTCTGGTAATGCTTTAAGCAATTGCTGTGATTATTGATATTGTTGGGAATAGCCCCTACAAGCGAATTAAGGGGTCAAGCTGTATTATTGATTTTGCCTCTTATTCGGTGTTATATGGTCACACCCTGATTAATGTCTAGGACGTGTACAATAAGATAGAATCTGAAAGTTTGGTCAGACTGCTGGATATGTAACTACAAGCAAACCAATTTTATCATCATTTGTTGGGAATTTAATGGAGGTGACCATCAATTGAAGGTTGTTCAGCTGGGGGTTaAATTT

Fln Alignment:

sp_v1.1_unigene27412___LMHKTPRLIDFDNKRSFFRSRI---RQQNEQHN-YNPLRICVRRTYVLEDSYNQLRMRSVDDIKGRLTVQFQGE-----EGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNQSTFQPNPNS-VLQTEHLSYFKFVGRVVAKALFDGQLLDVYFTRSFYKHILGAKVTYHDIEAVDPDYYKNLKWM--LENDVSDILDLTFSRDADEEKHILYEKTEVTDYELIPGGRNIRVTEENKHEYVDLVAEHTLTTAIRPQINAFLEGFNELIPRHLISIFNDKELELLISGLPE-IDLDDLKASTEYT-GYTAASPLIQWFWEVVQGFSKEDMARLLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAPE----RLPSAHTCFNQLDLPDYSSKEQLKERLLLAI
B8LKQ9_______________LLKRAPFLVPFTNRVQIYTSQLAAARQQNSFHTPFVRHRIRIRRNRAVEDAFSELNGLTGEELRGMIRVIFVNEFGVEEPGVDGGGIFKDFMENITKTAFDIQYGLFKETADHLLY-PNPASGTIHPEHLQYFEFLGKILGKAMFEGILVDIPFATFFLSKLKEKHNYLHDLPSLDPELYRSLLSLKHYDGDVSE-LGLYFVSENN-------EYGEQKEEEMLPGGKDMQVTNENVIKFIHLMANHHLNSQIRNQSSYFLRGFQQLIQSDWLNMFNEHELQLLISGSTEGMDVDGLRSNVHYAGGYSEDHPVIEMFWEVIKQFSLEQQKKFLKFVTGCSRGPLLGFKYLE---PPFCIQRAAPEDAPEEVLDRLPTSATCVNLLKLPPYRSKDVLRSKLLYAI

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
78			33	66	0.997452
79	66		33		0.997452
80			33	66	0.997452
179	66		33		0.997452
220	33		66		1.0
395	16	83			0.994512
476	87		12		0.992554
479	87		12		0.992554
641			90	10	0.90298
643	90		10		0.90298
656		10		90	0.90298
1026	88		11		0.999952
1074	11		88		0.923564
1139	80		20		0.995493
1143	80		20		0.995493
1144		80	20		0.995493
1197	80		20		0.995493
1365	90		10		0.999898
1629			84	15	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain