SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27411

Length: 1426 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27411

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyrroline-5-carboxylate reductase n=1 Tax=Picea sitchensis RepID=A9NNU3_PICSI	-	-	94%
FL-Next	sp=Pyrroline-5-carboxylate reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	pyrroline-5-carboxylate reductase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyrroline-5-carboxylate reductase.	EC:1.5.1.2	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Arginine and proline metabolism	00330	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	proline biosynthetic process	GO:0006561	Biological Process	82%
Blast2go	response to heat	GO:0009408	Biological Process	82%
Blast2go	response to salt stress	GO:0009651	Biological Process	82%
Blast2go	pyrroline-5-carboxylate reductase activity	GO:0004735	Molecular Function	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNU3

Fln msg:

Fln protein: MAMADGTFTLGFIGAGKMSEAIARGLDKSGILPSSRMRTAHARFPRREAFASFGVTIMESNSKVVEECEVIILGVKPQVVKEVLIDLKPILSDDKLLVSIAAGVKLKDLEEWAGKARVVRVMPNTPCLVGESAAVMSLGEKATAEDEKLVKGLFEAVGKIWTAKEKLLDAVTGLSGSGPAYIYLAIEALADGGVAAGLPRELASSLASQTVLGAAKMVMDTKKSPGQLKDEVASPAGTTIAGIHELEKGGFRATLMSAVIAAAKRSEELSKT*

Protein Length: 274

Fln nts: AGATGGCTGATCGCAGATGAAACCTTAACCTTAGATTTTCAATGCTCAACTGTGAGTGAACTTGGCTCCTTTACTGTTCGCATGTCACCTGTGGACTCCAACTCGGATTAGATGTCAGGTTTATAGTCACTGGATAGTAGACTGTCTAGCGTTTCAATTTCGTCTTCCAAGAATGCAACTGCTTGCTTGGAGGGTTCTGGCCATAAGCTGAGGGCGGAGCGAGGCCCTACAGTTCGAGAGAGGCGAAAAGAA_-_ATGGCGATGGCAGATGGAACATTTACATTGGGATTCATTGGAGCAGGCAAGATGTCGGAGGCTATAGCTCGAGGTCTTGATAAATCAGGGATCCTACCCTCTTCAAGAATGCGGACTGCCCATGCCCGCTTTCCTCGTCGAGAAGCTTTTGCCTCCTTTGGCGTCACCATTATGGAATCAAACTCCAAGGTAGTTGAAGAATGCGAGGTTATAATTCTTGGAGTGAAACCCCAAGTTGTTAAAGAAGTTCTTATAGACTTGAAGCCTATACTCTCGGATGACAAGTTGCTGGTGTCGATTGCAGCAGGTGTCAAGCTAAAAGATTTGGAGGAATGGGCAGGAAAGGCAAGGGTAGTAAGGGTGATGCCAAACACACCTTGTCTTGTTGGTGAAAGTGCAGCAGTTATGAGCTTGGGTGAGAAGGCTACTGCTGAGGATGAGAAACTGGTGAAGGGTCTTTTTGAAGCAGTTGGCAAGATATGGACAGCGAAGGAAAAGCTTCTTGATGCCGTCACTGGCCTCAGCGGGAGTGGGCCAGCATATATATATCTTGCCATAGAGGCATTGGCTGATGGAGGTGTTGCAGCTGGGCTTCCACGGGAACTTGCATCATCACTGGCTTCCCAGACAGTTTTGGGAGCTGCAAAGATGGTGATGGATACAAAGAAAAGCCCTGGCCAACTTAAAGATGAAGTGGCATCTCCAGCTGGCACCACAATAGCTGGAATTCATGAGTTGGAAAAAGGAGGATTTCGTGCTACTCTCATGAGTGCTGTGATTGCTGCAGCGAAAAGAAGTGAAGAGCTTTCCAAAACATAG___CTAGATTCAGACTCATCTCATTTGTTACCAACAGCTTTTGAAAGGCAACAGAAGTAATTTCAATAACTGGGGTCAGTCATCCCTTATTTTCAAAGGAAGGAGATGATTTTTGTATTATTCTAGTGAAGAACAGAATACGATTTCTAGTATCTAAGTGGTAATTCTGGCTGCAAAAATTGTACTTTGACAACCGATATTGAGTATTGAGTATGTTTGTAGGATATTATAAATTTATAATCATTTATTGAATGTAAGTTCCTTCATTGTGAAGAAAATATGTACACTCTTCGTGTTACTTTCTGATCATTCGTTGAACATTCTTTCCTCGTGATGAAATCTAGTTATAGATTTACTA

Fln Alignment:

sp_v1.1_unigene27411___MAMADGTFTLGFIGAGKMSEAIARGLDKSGILPSSRMRTAHARFPRREAFASFGVTIMESNSKVVEECEVIILGVKPQVVKEVLIDLKPILSDDKLLVSIAAGVKLKDLEEWAGKARVVRVMPNTPCLVGESAAVMSLGEKATAEDEKLVKGLFEAVGKIWTAKEKLLDAVTGLSGSGPAYIYLAIEALADGGVAAGLPRELASSLASQTVLGAAKMVMDTKKSPGQLKDEVASPAGTTIAGIHELEKGGFRATLMSAVIAAAKRSEELSKT
A9NNU3_______________MAMADGAFTLGFIGAGKMAEAIARGLDKSGVLPSSRMRTAHTRLPRRETFASFGVTIMESNSKVVEECEVIVLGVKPQVVKEVLVDLKPILSEDKLLVSIAAGVKLKDLEEWAGKARVVRVMPNTPCLVGESAAVMSLGEKATAEDEKLVKVLFEAVGKIWTAKEKLLDAVTGLSGSGPAYIYLAIEALADGGVAAGLPRELALSLASQTVLGAAKMVIDTKKNPGQLKDEVASPAGTTITGIHELEKGGFRATLMSAVIAATKRSEELSKT

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
619	16	83			0.994512
628		85		14	0.993533
629		85	14		0.993533
630			14	85	0.993533
631			14	85	0.993533
717	90		10		0.90298
719		90	10		0.90298
884		12	12	75	0.975346
885			14	85	0.993533
887		14		85	0.993533
889			85	14	0.993533
892		14	85		0.993533
897	85			14	0.993533
898	85		14		0.993533
899	85			14	0.993533
900		14	85		0.993533
903	14		85		0.993533
950		80		20	0.995493
1142	11		88		0.923564
1184			14	85	0.993533
1210	11		88		0.923564
1222	37	62			1.0
1272			83	16	0.994512
1293	71		28		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain