SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27406

Length: 1498 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27406

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fk506 binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQB6_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	cell differentiation	GO:0030154	Biological Process	76%
Blast2go	embryo development	GO:0009790	Biological Process	76%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	76%
Blast2go	root development	GO:0048364	Biological Process	76%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	0.0	76%
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type	IPR023566	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUZ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 50 aas, your sequence is shorter than subject: 187 - 578

Fln protein: MKALIRPGGGSTHPQEGDQIIFHYTTRTENGVIVESTRSEYGGHGSPMRMVLGKSKMILGWEEGIPSMLKGEVSMLRIKPELHYGDENCPVEVAEDFPKSEELLFEIELLDFFKVKVITDDLGVTKRVLTEGEGWETAREPYEVKAWITARTHDERTLFSFNEGEPFHFTIGKKEVPAGLERLLEL*

Protein Length: 188

Fln nts: TGATGAAAGCTCTTATTAGGCCTGGTGGGGGGTCAACACATCCTCAAGAAGGAGACCAGATTATATTCCACTATACAACTCGAACTGAAAATGGGGTTATTGTTGAGTCCACGAGGTCAGAGTATGGAGGTCATGGCTCTCCAATGAGGATGGTTCTAGGGAAGAGCAAAATGATCCTTGGATGGGAAGAAGGCATCCCTTCAATGCTGAAAGGCGAGGTTTCTATGTTGAGGATTAAACCTGAGCTACATTATGGGGACGAGAACTGTCCAGTGGAAGTTGCTGAGGACTTTCCAAAGAGTGAAGAGCTTCTTTTTGAGATTGAATTACTAGACTTCTTTAAGGTCAAGGTTATAACTGATGATTTGGGTGTTACTAAGAGGGTTTTGACTGAAGGTGAAGGTTGGGAGACAGCTAGGGAGCCATATGAAGTCAAAGCTTGGATAACAGCAAGAACTCATGATGAGAGAACACTTTTTTCATTCAATGAAGGAGAGCCTTTCCACTTTACCATTGGGAAGAAAGAGGTGCCTGCAGGATTAGAAAGGCTATTGGAACTATGACTAGACGGGAGAAGGCTATTATATATGTTAATGGTTCTTACATAACGGACGCTTCTGCCATGCCATCATTTCAAAATATAAATGAAGAGGTTCAATTTGAAGTAGAAATTGTTCAAATTATTCAGGTACGCGATATGGTTGGTGATGGGCGCTTAATAAAGCGCCGTATCAGGGATGGAAAAGGTGAATTTCCAATGGATTGTCCTCTTCAAGACAGTTTATTATGCATACATTACAAGGGCATGCTTCCTGATGAAGGTGGCAAGGTATTCTATGACACTCGAGTTGATGGGAATGGTCAGCCATTGGAGTTTAAATCAGGAGAAGGCATGGTTCCAGAGGGACTAGAAATGTGCATACGACTAATGCTTCCAAATGAGATTGCTCTTATTTCGAGCACATCAGATTATGCCTATGACAAATTTAAACGACCTGAGAATGTTCCAGAAGGTGCAAACATTCAATGGGAAGTTGAGTTGCTTGAGTTTAAAATGCCAAAGGATTGGACTGGCTTGAATTTCAATGAGATAATGGATGAAGCTGAGAAAATAAAGAGCACTGGAATCGGCTTTTTAAAGAAGGAAAATATGAACTTGCAAAGGCTAAATATGAAAAGCTGCTGAAGGAGTTCAATCATGTCAATCCACAGGATGATGAAGAAGGGAAGATATTTGTGCAGACAAGGAGCTCCTTGCATTTGAATGTGGCAGCATGTTATCAGAAAACTGGGGAATATAAGAGATCTCTTGAGTCATGTAATAAGGTATTGGGAGAAAATCCTCGTCACGCAAAAGCCTTGTATCGACGTGGCATTGCTTATATGTCATGTGGAGATTTTGATGAAGCACGCAAAGACTTCAAAATGATTATAGATGTAGACAAATCATTGGAGCCTGATGTAACTGCTGCCCTGGCAAAACTCAGACGCAAGGACA

Fln Alignment:

sp_v1.1_unigene27406___KALIRPGGGSTHPQEGDQIIFHYTTRTENGVIVESTRSEYG-GHGSPMRMVLGKSKMILGWEEGIPSMLKGEVSMLRIKPELHYGDENCPVEVAEDFPKSXXXXXXXXXXXXXKVKVITDDLGVTKRVLTEGEGWETAREPYEVKAWITARTHDERTLFSFNEGEPFHFTIG
A9NUZ0_______________KLLVKEGEGWETPETGDEVEVHYT-----GTLLDSTKFDSSRDRGTPFKFKLGQGQVIKGWDQGIATMKKGETAVFTIPPEMAYGESGSPPTI----PPNATLKFDVELLSWASVKDICKDGGIFKKIIKEGEKWENPKEADEVLVKYEARLEDGTVVSKSEEGVEFYVKDG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
296	83			16	0.994512
297	83	16			0.994512
1397			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain