SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27404

Length: 676 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27404 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GST n=1 Tax=Ginkgo biloba RepID=A7E1W9_GINBI	-	-	3.0e-38	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	tau class glutathione s-transferase	-	-	6.98726e-39	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	6.98726e-39	60%
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	6.98726e-39	60%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	6.98726e-39	60%
Blast2go	Thioredoxin fold	IPR012335	-	6.98726e-39	60%
Blast2go	Thioredoxin-like fold	IPR012336	-	6.98726e-39	60%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	6.98726e-39	60%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
327	20		80		0.995493
328			20	80	0.995493
332			80	20	0.995493
341		20		80	0.995493
383	80	20			0.995493
419		20		80	0.995493
421		20		80	0.995493
422		20		80	0.995493
424			20	80	0.995493
425		20		80	0.995493
431		20	80		0.995493
433	80	20			0.995493
453	75		25		0.996473
457	75	25			0.996473
469		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain