SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27401

Length: 2493 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27401
GACAGAAATTAGACACTCAATTCTCTCGCTATGGCCGCCCATAGATGCAAAAATCAAATCCCAGATACAGTATAAGAATGTGAATTCAGGAGATATTTTCCATCGTTTACAATATGCATAGAGAGAAATTCACGAAAAAACAAATGTAATTTACAGATGAGATGACTTGCTCAGATACTATTTGCTAAAACGTGAAAATTCTCTCCCTGAGTCTCTCTAGAGACTAAAAATTACAACAGCTGCTCCCACACTTGCACACCTAATATATGAAACAGGCTAAATAGCTTGTAGAAATTCAATATTAATACAATGCTGTTCTGCATTACAACAAACTATTTCTTGGGACAGCTGCCACGTTTACTTTTAAAAAGAATTCCCTTTAAAATAAACTCATATGCCTACCCATTTCATCCAGTTAAAAAATCTTCCAAGCCTCAAAGGCATTCCGTAATCCTTCACAATGGCAGGTTCACTCCTTCCACCTTTTGACCGGCACCATATATAAACCCCCCGTTCTTGCCTACTGCCCGGAACAGTATTGTCTAGGATAAAAGCCACCAGGAATGCAATCACCATGTGAAGTGAGAATAGAGTGTTTAATACATAATTCAGTCCACCGTTACTGCTACGGAAGGGTCCATGTGAAGCCACTATGTAGGGCAGATAATAGCTTGGTACAGGAGTGTTTGCATTTGGTGAAACTCCATATTGTTGGAAGTAGGCAGGTATTGATAGCGAAAGGAAAAGAGAGAGACCTACAATGATAACATTCCTTGAGCTCCCAGTTTCACTGTATCGTAAATTTGATAAACCCAATGCCGCAAGCATAGCCCACATAAAACATAGAAGAGCAGCAACCATGGCTGGTGGAATCGAAGCTAAAATGGCTCCCACTTTGCCAACAAGTGAAATGAGGATTAACAATCCAGCACCAAGTTCCACAGCCCTTCTACTTCCCATATAATTTTCCTTTGGCAAGGCTTTCTTCAGTGCGAACCCTCTAGCACAGTGCAAACCCTCCGAGCCCTTAGGAATCTAGAGCATCAGATTTGAGTGGGACGCACGGCGGCCTTGGATTTCAAGGTTTCGAGTTCAGAAAGGTCTGAAGTCAGGCAGAAGATGGCTGCCCGTTGCGAGTCCCATGTACGATTTTCTTGTGGTGTCTTTGCCATGGTCATTTTGGTGGCTGTGCTAAGAGTGTGTCCAGTAGCAGCTCAGATATCTGAGATGGAAAGAGGAGATGACACATCGCACCGGTCGTCCAACAACTTGGTAAAGTTGCCATGGCGCAAGGGCAAAGTTGGCTATAGATACATTGCAAAATGAGTCTGTTATGGAGCAGAGTGATGTGAAGGCCGTTTCAGTATCAGATGGACTGGGCATTTTTGATGCATTTTTTGCAAGCTTGTCGATGATTCTTGTCAGTGAGATTGGAGATGAGACATTCATCATTGCAGCACTTATGGCAATGCGCAATCCGAAGTCAATTGTTTTGTCTGGTGCTCTTAGTGCCCTTTTTGTGATGACAGTGCTATCTACTGCATTGGGAAGGATAGTTCCAAATTTGATATCAAGAAAACACACAAATAGGGCAGCTACAGTTTTATATGCTTTTTTTGGCCTGCGTTTACTTTACATAGCTTGGAGGTCTGATGCAAAGACTTCACATAAAAAGGAGATGGAGGAGGTGGAAGAAAAACTGGAAAGTGGAGCAGGAAAAACAACATTTCGCCGCTTTTTCACGAGGTTTTGTACACCAATTTTTTTGGAGTCATTTATTCTGACATTTTTGGCTGAGTGGGGAGATCGTAGCCAAATAGCAACAATTGCGCTGGCAACCCATAAGAATGCACTCGGGGTTGCTGTGGGTGCAACACTAGGTCACACGATATGCACTTCAGTGGCAGTCGTTGGGGGAAGTATGCTGGCATCAAAAATCTCGCAAAAGACCGTTGCTACTGTGGGAGGATTGCTGTTTCTTTGCTTTTCATTGAGTTCTTACTTTTACCCTCCCATGTAACTTCATTGTTGTAAAGTAATATTACATTTTTCCTGGCCCAAAGAATGATTGCTTCTCTGTATACAATTTATGAAGGACGAATTTATTATATTCATTTCATTCTTTTCCTAATTTAGGGTGCTCTGTCATACCAAACAGTCATTTGGCCGAGAGAAATGAATGTACTCTAACCTCAATCAACATGCTGTATAAATGTTAATGCAAGATGGGAGCTATTCTAGAAATGAGGCTAAAGGAGTGTAGCGATGGAGTGTTCTAAAACTGGAACTTCAAAGTTTTGACATGGAAGTTTAAAGCTTGATGAGGCATCATGATTCTAGCACATCAATAGCATAGTTATGGTATAATGTAGTGACGCATACTGAAATTTAATAACTCTATCTTGAGAGTGTGATATATCATCATTAAGATCCTACTTTTGCCCTTTCCATGTAATCACATTGTCGTAAAGTATTTTTACATTTTTCTTGGCC

Ace file of the UniGene sp_v1.1_unigene27401

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG2119 Predicted membrane protein	-	-	9.0e-35	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	membrane protein	-	-	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family UPF0016	IPR001727	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSR6

Fln msg: Overlapping hits, possible frame ERROR between 1302 and 1292,

Fln protein: MAARCESHVRFSCGVFAMVILVAVLRVCPVAAQISEMERGDDTSHRSSNNLVKLPWRxxxxxAIDTLQNESVMEQSDVKAVSVSDGLGIFDAFFASLSMILVSEIGDETFIIAALMAMRNPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKTSHKKEMEEVEEKLESGAGKTTFRRFFTRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATLGHTICTSVAVVGGSMLASKISQKTVATVGGLLFLCFSLSSYFYPPM*

Protein Length: 302

Fln nts: GACAGAAATTAGACACTCAATTCTCTCGCTATGGCCGCCCATAGATGCAAAAATCAAATCCCAGATACAGTATAAGAATGTGAATTCAGGAGATATTTTCCATCGTTTACAATATGCATAGAGAGAAATTCACGAAAAAACAAATGTAATTTACAGATGAGATGACTTGCTCAGATACTATTTGCTAAAACGTGAAAATTCTCTCCCTGAGTCTCTCTAGAGACTAAAAATTACAACAGCTGCTCCCACACTTGCACACCTAATATATGAAACAGGCTAAATAGCTTGTAGAAATTCAATATTAATACAATGCTGTTCTGCATTACAACAAACTATTTCTTGGGACAGCTGCCACGTTTACTTTTAAAAAGAATTCCCTTTAAAATAAACTCATATGCCTACCCATTTCATCCAGTTAAAAAATCTTCCAAGCCTCAAAGGCATTCCGTAATCCTTCACAATGGCAGGTTCACTCCTTCCACCTTTTGACCGGCACCATATATAAACCCCCCGTTCTTGCCTACTGCCCGGAACAGTATTGTCTAGGATAAAAGCCACCAGGAATGCAATCACCATGTGAAGTGAGAATAGAGTGTTTAATACATAATTCAGTCCACCGTTACTGCTACGGAAGGGTCCATGTGAAGCCACTATGTAGGGCAGATAATAGCTTGGTACAGGAGTGTTTGCATTTGGTGAAACTCCATATTGTTGGAAGTAGGCAGGTATTGATAGCGAAAGGAAAAGAGAGAGACCTACAATGATAACATTCCTTGAGCTCCCAGTTTCACTGTATCGTAAATTTGATAAACCCAATGCCGCAAGCATAGCCCACATAAAACATAGAAGAGCAGCAACCATGGCTGGTGGAATCGAAGCTAAAATGGCTCCCACTTTGCCAACAAGTGAAATGAGGATTAACAATCCAGCACCAAGTTCCACAGCCCTTCTACTTCCCATATAATTTTCCTTTGGCAAGGCTTTCTTCAGTGCGAACCCTCTAGCACAGTGCAAACCCTCCGAGCCCTTAGGAATCTAGAGCATCAGATTTGAGTGGGACGCACGGCGGCCTTGGATTTCAAGGTTTCGAGTTCAGAAAGGTCTGAAGTCAGGCAGAAG_-_ATGGCTGCCCGTTGCGAGTCCCATGTACGATTTTCTTGTGGTGTCTTTGCCATGGTCATTTTGGTGGCTGTGCTAAGAGTGTGTCCAGTAGCAGCTCAGATATCTGAGATGGAAAGAGGAGATGACACATCGCACCGGTCGTCCAACAACTTGGTAAAGTTGCCATGGCGCxxxxxxxxxxxxxxxGCTATAGATACATTGCAAAATGAGTCTGTTATGGAGCAGAGTGATGTGAAGGCCGTTTCAGTATCAGATGGACTGGGCATTTTTGATGCATTTTTTGCAAGCTTGTCGATGATTCTTGTCAGTGAGATTGGAGATGAGACATTCATCATTGCAGCACTTATGGCAATGCGCAATCCGAAGTCAATTGTTTTGTCTGGTGCTCTTAGTGCCCTTTTTGTGATGACAGTGCTATCTACTGCATTGGGAAGGATAGTTCCAAATTTGATATCAAGAAAACACACAAATAGGGCAGCTACAGTTTTATATGCTTTTTTTGGCCTGCGTTTACTTTACATAGCTTGGAGGTCTGATGCAAAGACTTCACATAAAAAGGAGATGGAGGAGGTGGAAGAAAAACTGGAAAGTGGAGCAGGAAAAACAACATTTCGCCGCTTTTTCACGAGGTTTTGTACACCAATTTTTTTGGAGTCATTTATTCTGACATTTTTGGCTGAGTGGGGAGATCGTAGCCAAATAGCAACAATTGCGCTGGCAACCCATAAGAATGCACTCGGGGTTGCTGTGGGTGCAACACTAGGTCACACGATATGCACTTCAGTGGCAGTCGTTGGGGGAAGTATGCTGGCATCAAAAATCTCGCAAAAGACCGTTGCTACTGTGGGAGGATTGCTGTTTCTTTGCTTTTCATTGAGTTCTTACTTTTACCCTCCCATGTAA___CTTCATTGTTGTAAAGTAATATTACATTTTTCCTGGCCCAAAGAATGATTGCTTCTCTGTATACAATTTATGAAGGACGAATTTATTATATTCATTTCATTCTTTTCCTAATTTAGGGTGCTCTGTCATACCAAACAGTCATTTGGCCGAGAGAAATGAATGTACTCTAACCTCAATCAACATGCTGTATAAATGTTAATGCAAGATGGGAGCTATTCTAGAAATGAGGCTAAAGGAGTGTAGCGATGGAGTGTTCTAAAACTGGAACTTCAAAGTTTTGACATGGAAGTTTAAAGCTTGATGAGGCATCATGATTCTAGCACATCAATAGCATAGTTATGGTATAATGTAGTGACGCATACTGAAATTTAATAACTCTATCTTGAGAGTGTGATATATCATCATTAAGATCCTACTTTTGCCCTTTCCATGTAATCACATTGTCGTAAAGTATTTTTACATTTTTCTTGGCC

Fln Alignment:

sp_v1.1_unigene27401___QKMAARCESHVRFSCGVFAMVILVAVLRVCPVAAQISEMERGDDTSHRSSNNLVKLPWRxxxxAIDTLQNESVMEQSDVKAVSVSDGLGIFDAFFASLSMILVSEIGDETFIIAALMAMRNPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKTSHXXXXXXXXXXXXSGAGKXXXXXXXXXXCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATLGHTICTSVAVVGGSMLASKISQKTVATVGGXXXXXXXXXXXXXPPM
A9NSR6_______________QKMAARCESHVRFCYGVFAMVILVAVLRACPVAAQISEMERGDDPSHRSSNDLVKLPWRxxxxAIDPLQNDSVMEQSDVKAASVSDGQGIFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKNSQKKEMEEVEEKLENGAGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATLGHTVCTSVAVIGGSMLASKISQRTVATVGGLLFLCFSLSSYFYPPM

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
979			66	33	0.997452
980	33		66		0.997452
983	33			66	0.997452
985		66	33		0.997452
986			33	66	0.997452
987			33	66	0.997452
988		66	33		0.997452
1010		33		66	0.997452
1576	64		35		1.0
1610	20		80		0.999996
1611		70		30	1.0
1612			20	60	0.999999
1613		20		80	0.999996
1671	83	16			0.994512
1735		57		28	1.0
1895	84		15		0.999986
2293	91		8		0.999807
2322		21		78	1.0
2356			52	47	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain