SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27398

Length: 1078 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27398

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L13a n=18 Tax=Pinaceae RepID=RL13A_PICMA	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	92%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L13, eukaryotic/archaeal	IPR005755	-	92%
Blast2go	Ribosomal protein L13	IPR005822	-	92%
Blast2go	Ribosomal protein L13, conserved site	IPR023563	-	92%
Blast2go	Ribosomal protein L13 domain	IPR023564	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNL7

Fln msg:

Fln protein: MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHYDTITELEEKRKAKANVSYERRKQLAKLRSKAVELAEKQLAPEMELLASIKY*

Protein Length: 208

Fln nts: ATAAAATGTGTCTTAAATAATTACTAGGGTCAAAACCCTAATTGGAGGAGGCTACCCGTAAGGCTTCAAAGCTTTCTCGTCGACTGTCGAGCGAGAGAGAGACGGAGGGAGCGAGGAGTAGCAGAGAGGAGGAGAACA_-_ATGGTGAGCGGATCAGGAATCTGCGCGAAGGAGGTGGTGGTGGATGCGCGCCACCATATGCTTGGCCGCCTCGCCTCTATACTGGCCAAGGAGCTTCTCCATGGTCAGCGAGTGGTTGTGGTGCGTTGTGAAGAGATATGTATGTCTGGTGGACTTGTTCGTCAGAAGATGAAATACTTGCGTTTTCTAAGGAAGCGAATGAATACAAAGCCGTCTCATGGTCCGATTCATTTTCGAGCTCCATCAAGAATTCTTTGGAGGACAATTAGAGGAATGATTCCACACAAAACCAAGCGTGGTGCAGCAGCACTTGCTAGGCTAAGGGCTTTTGAAGGGGTTCCCCCACCATATGACAGGAAGAAGAGAATGGTCATTCCAGATGCTCTGAAAGTGTTGAGGCTTCAGCCAGGTCACAAGTATTGTCTGCTAGGAAGGCTTTCCAAAGAAGTTGGCTGGCATCATTATGACACTATTACGGAATTGGAAGAGAAGAGAAAGGCAAAGGCTAACGTATCATATGAGAGAAGGAAGCAGTTAGCAAAATTGAGATCAAAAGCGGTGGAGTTAGCCGAAAAGCAGCTTGCCCCAGAAATGGAACTCTTAGCTTCAATAAAGTATTAG___AGAAGCTGCTGCATGTTATGCTCAATTAAGCAATCAATTTTGAAAATGACATGAAAATATTTTTGAACATGAGGTTTTTAACTAGAAAGATATTCATACTTTATTCGTTTAATGTTTTGCTTTTGTAGCTGAATGAGCATTTTTGGCCAAAGTACTTGTCAGTTAGTACTTCCAATTTATTAAGCGTTCTTTGAGGGGTGTACTTTGTAGTGAATATCAACTTCTTAGTTTGATAATATTTTTTAATTGTAGTTTGTAAACACTATCATGTCAGGTTTCAGCCAATGAAAATGTGCATTTGTCATTGTTTCGTTTCAAA

Fln Alignment:

sp_v1.1_unigene27398___MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGXXXXXXXXXFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHYDTITELEEKRKAKANVSYERRKQLAKLRSKAVELAEKQLAPEMELLASIKY
A9NNL7_______________MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALARLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
696	12		87		0.999964
990		18		81	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain