SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27386

Length: 1567 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27386

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UTR3; UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transporter	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	udp-galactose transporter 3	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	endoplasmic reticulum unfolded protein response	GO:0030968	Biological Process	81%
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	81%
Blast2go	UDP-glucose transmembrane transporter activity	GO:0005460	Molecular Function	81%
Blast2go	UDP-galactose transmembrane transporter activity	GO:0005459	Molecular Function	81%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRK5

Fln msg:

Fln protein: MEKEITAFQRLLWLLLCVGGIFGAYIYQGFLQETLSTKRFGPDGQRFQHLPFLNFAQNVVCLAWSYLMINLWSTKGSGAAPLWKYWSPSITNTIGPALGLQALKYISYPAQVLAKSSKMIPVMLVGALFYGIKYTVPEYICTFLVASGVSLFALSKSSSKTVSKLAHPNAPWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFIYMFLFPGGGGFEALQFCKQHPEAARDILWFCVCGAIGQNFIFTTISLFGSLTNTTITTVRKFFSILVSSLFSGNPLSDKQWVSVFMVFGGLGYQIHLKRRRTQPKVKAI*

Protein Length: 331

Fln nts: TCAGTTGACTGAATTTGCATCGGAGAGGGACAACACCATGGTTGTCTTCCGATAAAAGGCGCTCAGACATCGATTTGAATGCACCTAAGACTCGACGTTGGTTAAAATTGGAGGACTGTTCAAATAGAAAG_-_ATGGAGAAGGAAATTACTGCGTTTCAGCGCCTTTTATGGCTTCTGCTCTGTGTCGGGGGGATTTTTGGGGCTTACATATATCAAGGATTTTTACAGGAAACCTTGTCCACTAAACGTTTTGGTCCCGATGGCCAAAGATTTCAACACCTGCCGTTCTTGAACTTCGCACAGAATGTAGTCTGCTTAGCCTGGTCGTACCTAATGATAAATCTTTGGTCCACAAAAGGTAGTGGGGCAGCCCCACTCTGGAAATATTGGAGCCCTAGCATAACAAATACTATTGGACCAGCATTAGGTCTCCAAGCATTGAAGTACATCAGCTACCCTGCTCAGGTTTTGGCTAAATCTTCAAAAATGATTCCAGTGATGTTGGTTGGAGCATTGTTTTACGGCATCAAATATACTGTTCCTGAATACATATGCACTTTTCTTGTTGCTAGTGGGGTGTCTTTATTTGCACTTTCTAAGAGTAGTTCAAAGACTGTAAGTAAGCTTGCACACCCAAATGCACCATGGGGATATGGACTTTGCCTTGCTAATCTTCTATTGGATGGATACACAAATTCCACTCAGGATAATATAAAAAGGAGGTATCCTAAAACAAATGGATGGGACATAATGCTAGGGATGAATCTTTGGGGTTCGATTTACTCCTTCATCTATATGTTTCTTTTTCCGGGCGGTGGTGGTTTTGAGGCACTGCAGTTCTGTAAACAGCACCCTGAAGCTGCACGGGATATTTTATGGTTCTGTGTTTGTGGAGCGATAGGGCAGAATTTTATCTTTACGACGATAAGTCTGTTTGGGTCTTTGACAAATACCACTATAACTACTGTACGCAAATTTTTTAGCATTCTTGTATCATCACTGTTTAGTGGCAACCCACTTTCTGATAAACAATGGGTTAGTGTATTCATGGTATTTGGTGGCTTAGGATATCAAATCCATTTGAAACGGAGACGGACACAGCCTAAGGTCAAAGCTATCTAG___TCAAAATGTGATGTATGGTAATCGCAGAGTAGAGTTTAGTGTGTCTCCAGTTCATCGGATGTTTAAGCAAATTGACCAGCTATTTGTTCCAGAAAAGATATATGATGAAAGATAATTGCATTGCTTCACATGAAGAAGCAAACTTTCTAATTTTTCCCTCATGTAAGGTTGATCTATATTGGACTAAGTAGAGAACCATAAGCTAGATCTTGGGTGAGCTCCTGAAGATTTGAGCTTTGAAAACTAGCGATATTTGATTTATGGCAATCCAATTAAATTGGGTTTTTCCCATATGTAGTGAGTCGGGTACTTGCCAATTCATTGAAATGGAACCCTTTATTAACTGTTTACTAAGAGTTTCTACAATTGAGTTCCACTTGTATATCTGTGCTAGTATATTCTGTTCGCCGAGCTGTGGTCGAGACaGGCATCGCCACACTAATGAA

Fln Alignment:

sp_v1.1_unigene27386___MEKEITAFQRLLWLLLCVGGIFGAYIYQGFLQETLSTKRFGPDGQRFQHLPFLNFAQNVVCLAWSYLMINLWSTKGSGAAPLWKYWSPSITNTIGPALGLQALKYISYPAQVLAKSSKMIPVMLVGALFYGIKYTVPEYICTFLVASGVSLFALXXXXXXXXXXLAHPNAPWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFIYMFLFPGGGGFEALQFCKQHPEAARDILWFCVCGAIGQNFIFTTISLFGSLTNTTITTVRKFFSILVSSLFSGNPLSDKQWVSVFMVFGGLGYQIHLKRRRTQPKVKAI
A9NRK5_______________MEKEITQFQRLLRLLFCVGGIFGAYIYQGFLQETLSTKRFGPNGQRFQHLPFLNFAQNVVCLAWSYLMITLWSTKSSGAAPPWKYWSPSITNTIGPALGLQALKYISYPAQVLVKSSKMIPVMLVGALFYGIKYTVPEYICTFLVASGVSLFALSKSSSKTVSKLAHPNAPWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFFYMFLFPGGGGFEALQFCKQHPEAAWDILWFCVCGAIGQNFIFMTISLFGSLANTTITTVRKFFSILVSSLFSGNPLSDRQWISVFMVFGGLAYQIYLKRRRTQPRGKAI

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
187			75	25	0.996473
188		25	75		0.996473
190			75	25	0.996473
193		25		75	0.996473
194		25		75	0.996473
197			25	75	0.996473
199			75	25	0.996473
201			75	25	0.996473
203	25			75	0.996473
204		25		75	0.996473
205	75			25	0.996473
251	25			75	0.996473
263		25		75	0.996473
295		25		75	0.996473
370	25	75			0.996473
501		60		40	1.0
704		10	90		0.90298
705		10	90		0.90298
706	90			10	0.90298
708	87		12		0.992554
709	87		12		0.992554
711	87		12		0.992554
713	87	12			0.992554
715	87	12			0.992554
716	87			12	0.992554
827	20		80		0.995493
829		80	20		0.995493
832	16			83	0.994512
833	16		83		0.994512
837	16			83	0.994512
838		16		83	0.994512
839	16	83			0.994512
840	16			83	0.994512
915	14			85	0.993533
917			14	85	0.993533
918	85		14		0.993533
919		85	14		0.993533
1022	33			66	1.0
1106		6	93		0.999453
1110	89			10	1.0
1116	93		6		0.999453
1159	93	6			0.999453
1165		6		93	0.999453
1168		93	6		0.999453
1169		93	6		0.999453
1170	93	6			0.999453
1178	37		62		1.0
1179	3		62		1.0
1182	34		65		1.0
1330		57		42	1.0
1424		23		76	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain