SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27357

Length: 1320 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27357 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RanA1; ran-family small GTPase; K07936 GTP-binding nuclear protein Ran	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	small ras-like gtp-binding protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	intracellular transport	GO:0046907	Biological Process	96%
Blast2go	protein transport	GO:0015031	Biological Process	96%
Blast2go	protein binding	GO:0005515	Molecular Function	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR12

Fln msg:

Fln protein: MALPGQHADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAVIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLSGDPNLHFVESPALAPPEVQIDLATQQQYEAELVAAAAQPLPDDDDDAFE*

Protein Length: 222

Fln nts: ATGGGGAAGGCATTTTATCATTTTTTGCCAATTTTAGAGACGATTATAGTGTAATAAAAAGGTGTCTTTGCTCCAAGTTAAAAAGCGGAATTCTCTTTTGGCCATTTTAAGGGTTACTGCCTTTCAATTTCATATATTTGTTCTCGCTTCGTGTCCGTGGGCTCTCTGCATTCTTCGCGTGCAACTTTTGTTTTCCTCATATCCTCAGGGCCTCACCTTCAGTGGTCTCGTCCTCTAATTGAGTCTCTGAAGTACTCTTAATCTTGTTAA_-_ATGGCTCTACCCGGTCAGCACGCTGATTGCCCTAGCTTTAAGCTCGTTATTGTTGGCGATGGAGGAACTGGGAAGACAACCTTCGTGAAGCGTCATCTTACCGGGGAGTTTGAGAAGAAATACGAGCCTACCATTGGTGTTGAAGTCCATCCTCTTGATTTTTTCACAAACTGTGGGAAAATCCGTTTTTATTGTTGGGACACTGCTGGGCAAGAGAAGTTTGGTGGCCTCAGAGATGGTTACTATATTCATGGGCAATGTGCAGTTATCATGTTTGACGTTACTGCACGCTTGACTTACAAGAATGTCCCGACGTGGCACAGAGATCTTTGCAGGGTGTGTGAGAACATTCCTATTGTTCTTTGTGGAAACAAGGTTGATGTGAAGAATAGGCAAGTGAAAGCTAAGCAAGTTACTTTTCATAGAAAGAAGAATCTTCAGTACTATGAGATATCTGCAAAAAGTAACTACAACTTTGAGAAGCCATTCCTGTACTTGGCACGGAAGCTCTCAGGGGATCCAAACCTTCATTTTGTGGAGTCACCTGCTCTTGCTCCTCCTGAGGTTCAGATAGACCTTGCAACCCAGCAGCAGTATGAGGCAGAACTTGTAGCAGCTGCGGCCCAACCTCTTCCAGATGACGATGATGATGCTTTTGAATAG___CTTTGTTGACATGCTTTTGCATATCTAGGGATTGGCGGATTCAATTAGTTTTGTATCATTGGAGTTTGCTCTTGAGTTCCGACATTTAATTCTGATTTGTATTTGGGGCTTAGAATAGCATTATCGCATCTCTATATGTGATTTGGGTACTGTGCAGATGTTTTCATTGGTGGAGTTGCCTAAGCTATCTTAGTTCAACTCCATTACAGAGCTATTTTTATATGCTAAGACAGTTTTTCCCGTTATATCCGTTATATACTCTTGCACATTTTGCACAAGAACTTTTTGTACTCTTCAAATATTTCAAGAATGCTCAAGTGCCTTTCCTTGTGTACTGTTGGGGCAAATGCTAGTTGCAATGATAGTTGCTTGTAATATATTATGGCA

Fln Alignment:

sp_v1.1_unigene27357___MALPGQHADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAVIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLSGDPNLHFVESPALAPPEVQIDLATQQQYEAEL
A9NR12_______________MALPGQHADCPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAVIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLSGDPNLHFVESPALAPPEVQIDIATQQLYEAEL

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
570	6		3	89	0.998304
630		7	92		0.999664
631	88	7			0.999079
677	8			92	0.999718
924	16	8	75		0.99999
926	8		16	75	0.99999
928		16	83		0.999991
929	16			75	0.99999
931			16	83	0.999991
932		8	16	75	0.99999
935	16		8	66	0.999991
936	8	16		75	0.99999
937		83	16		0.999991
938	16		8	75	0.99999
940	81		18		0.999994
992		11		88	0.923564
1099	11	88			0.923564
1100		11		88	0.923564
1123	14		85		0.993533
1154	86	10			1.0
1155		10	86		1.0
1156	86	11		1	1.0
1157		11	86	1	1.0
1159		3	81	10	1.0
1163	92	5			0.999988
1164	5	84	1	7	1.0
1165		8	85	6	1.0
1166		8	89	2	1.0
1168		91		8	1.0
1170		74	25		1.0
1188	83	16			0.999991
1189		16		83	0.999991
1190		18	81		0.999994
1192	81			18	0.999994
1213	85			14	0.993533
1214	85		14		0.993533
1216	85		14		0.993533
1219	14		85		0.993533
1222	85	14			0.993533
1225	85		14		0.993533
1227	85			14	0.993533
1228		14	85		0.993533
1230	85	14			0.993533
1231			14	85	0.993533
1232	14			85	0.993533
1234		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain