SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27346

Length: 2498 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27346
TCGTGACCTTGGCTGTCACTCAACACAATACAATGAGTTTTTTTTCCACTGCATGTTCACATAACCCGCCATGGCCATGAACTTCCCATCCAGAGGCCTCAGCAATTCCTGCTTCCTTAGATTCAATACAAGGACTGTGGCAAAGAGACACACTAGGGATAAACAGCATTCCTTAGATTCAATACAAAGGTACAAAGGACTGTGGCAAAGAGACACACTAGGCATAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTCTGGCTTGATTCAACCTACACAGAGTTTATTCAACAACACAACACTTACAGGTTAGTATAATTTTCTACCTCTCGTTGCGCACAAAACATTTGATTTTACTCATTACTATCCTCTGGAATGGAATGTTCTGTGTAACCTTCTTTAAATTCCAGAAGCATAAAGACCAGCTTTGCAACACAAACATTAAGTCAACTGTGAGACGCTGCTACCATGGCCGGTCTTAACGCCATGAAAATTATTAATTAACGCGACGTAGTTGGTGAATGGTGACTGAGCTGTGACGTGTCGAATCTTCATTGGATAGAGGAGGACGAAAATGCAGCCCTGAGATTGGCCAACAACCCCCTCATCACCCCAACTAACTCCACACGGCGTAATTAACGCTGCGGAGCCTTCAAGAGAAACGTTACATAAACCCTCCAAACAATTTCATTGGAGTCATGCGCATCTCTAGTCCCGCCATTATTTCTGTCTTGCTATGATTATTGCCTTCAAATTTTCCGGGAATCGTAGCTAAATTTAGCGGCTGTATGGCCAGAGCATCGTACCAGCCTACAGCTCTAGTCCCGCCATTATTTCTGCTATTCGGCTCTGTCTTGCTATAGCCTTCAAATATTTGGGGAATCGTAGCTAAATTAAACGTCAATATGGCCAGAGCATCGTGCCTGCCTACTGGTTCTCCCCTTGCCAGGGAATCGAACTGCATACCTCTTATTTCGTTCCTCAATGGAGAGATTTCAGGGATAGCTGTAAGCGTTTCGTTGAAGATTTCATCTACGAGGAGTGTGCGCAAGGGCGTTCGATGCGCTGTAGCTGAAGGATTTCGTGAAACCCTTGGCGTATCGGCACACCGGCCTCGCAGAGTTGTTGGCAGAGGTTCGAGATTGATAGGTTCTGGTTCAGCAGTGCCTAAACTTGTGGTTTCAAACAACGATCTTTCTAAACTGGTGGATACTTCAGATGAATGGATCTCTTCTCGTACAGGGATCCGTAATCGACGGATTCTTTCAGGTGATGAAACACTAACTGGTTTAGCTATAGAGTCATCTAGAAAAGCCCTTGAAATGGCGAAAGTCAGGCCAGAGGATGTTGACTTGGTTTTGATGTGTACCTCTACTCCAGATGATCTATTTGGTGGTGCTCCCCAAGTGCAGAGGGAGGTGGGTTGTATAAAAGCCTTGGCTTTTGACATTACAGCTGCTTGTAGTGGCTTTGTGTTGGGTCTTGTAACAGCTACACGTTTCATAAAAGGTGGCGGATTTGAAAATGTTTTGGTTATTGGAGCTGATGCCCTTTCTAGATATGTTGATTGGACAGACCGGGGCTCCTGCATTCTTTTTGGGGATGGAGCTGGTGCTGTGCTGTTACAGGCAGCTAAAGGAGATCAGGATGGTCTACTGGGTTTTGATCTACAGACTGACGGGCATGGTCAAAAGCATTTGAGTCTCCCAACCATTGGAGAAGGTGCAGTGAAGGACTTGGGTAGCTCAAATGGTGCAGCACTGAAACCTCCAAAGCCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACAGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACCAGAGGATTATTAGTGCTGTAGCTGATCGGCTGCAGATTCAACCTGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAAGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAACGGCAGGTTTTGGAGCTGGAGTTACATGGGGTTCAGCCATTGTGAGATGGGATTGATTGAATATTGCTCACTTCAGGAATGGTAGACCAAGACAGCAGTGCTTGTCTGAAAAGGTTTTACTGCCACGAGGAAAAGTTGATTGAGAAATCTAGTTCCTCCACATATACCCATTGTTAATTTTTTGATTCTCGAGTTCTTTCCAAGCTCAATTACGGCAGCACTTGGGTTGCTTTGTTGTTTTCCTTAATTTCCATTTCATATTTTATAATTGTAACTTTGTTACGATAGAGTAATGCAAACAGAATGTTCCTGGCAGTGTGCTTGACTTGATGGATACTGGTTTTTAACGGCAATTAATAAAAGGCCTTTACTCCAAAGCCCAGCGTTACACTTAC

Ace file of the UniGene sp_v1.1_unigene27346

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-acyl carrier protein synthase III n=2 Tax=Elaeis RepID=Q1KS41_ELAOL	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	3-oxoacyl-synthase iii	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Beta-ketoacyl-acyl carrier protein synthase III (FabH)	IPR004655	-	82%
Blast2go	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	82%
Blast2go	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III	IPR013751	-	82%
Blast2go	Thiolase-like, subgroup	IPR016038	-	82%
Blast2go	Thiolase-like	IPR016039	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKT2

Fln msg:

Fln protein: MARASCLPTGSPLARESNCIPLISFLNGEISGIAVSVSLKISSTRSVRKGVRCAVAEGFRETLGVSAHRPRRVVGRGSRLIGSGSAVPKLVVSNNDLSKLVDTSDEWISSRTGIRNRRILSGDETLTGLAIESSRKALEMAKVRPEDVDLVLMCTSTPDDLFGGAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDGAGAVLLQAAKGDQDGLLGFDLQTDGHGQKHLSLPTIGEGAVKDLGSSNGAALKPPKPSSHSCIQMNGKEVFRFAVNRVPQVIEAAMEEAGIAGSHLDWLLLHQANQRIISAVADRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQSGHVIATAGFGAGVTWGSAIVRWD*

Protein Length: 412

Fln nts: TCGTGACCTTGGCTGTCACTCAACACAATACAATGAGTTTTTTTTCCACTGCATGTTCACATAACCCGCCATGGCCATGAACTTCCCATCCAGAGGCCTCAGCAATTCCTGCTTCCTTAGATTCAATACAAGGACTGTGGCAAAGAGACACACTAGGGATAAACAGCATTCCTTAGATTCAATACAAAGGTACAAAGGACTGTGGCAAAGAGACACACTAGGCATAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTCTGGCTTGATTCAACCTACACAGAGTTTATTCAACAACACAACACTTACAGGTTAGTATAATTTTCTACCTCTCGTTGCGCACAAAACATTTGATTTTACTCATTACTATCCTCTGGAATGGAATGTTCTGTGTAACCTTCTTTAAATTCCAGAAGCATAAAGACCAGCTTTGCAACACAAACATTAAGTCAACTGTGAGACGCTGCTACCATGGCCGGTCTTAACGCCATGAAAATTATTAATTAACGCGACGTAGTTGGTGAATGGTGACTGAGCTGTGACGTGTCGAATCTTCATTGGATAGAGGAGGACGAAAATGCAGCCCTGAGATTGGCCAACAACCCCCTCATCACCCCAACTAACTCCACACGGCGTAATTAACGCTGCGGAGCCTTCAAGAGAAACGTTACATAAACCCTCCAAACAATTTCATTGGAGTCATGCGCATCTCTAGTCCCGCCATTATTTCTGTCTTGCTATGATTATTGCCTTCAAATTTTCCGGGAATCGTAGCTAAATTTAGCGGCTGTATGGCCAGAGCATCGTACCAGCCTACAGCTCTAGTCCCGCCATTATTTCTGCTATTCGGCTCTGTCTTGCTATAGCCTTCAAATATTTGGGGAATCGTAGCTAAATTAAACGTCAAT_-_ATGGCCAGAGCATCGTGCCTGCCTACTGGTTCTCCCCTTGCCAGGGAATCGAACTGCATACCTCTTATTTCGTTCCTCAATGGAGAGATTTCAGGGATAGCTGTAAGCGTTTCGTTGAAGATTTCATCTACGAGGAGTGTGCGCAAGGGCGTTCGATGCGCTGTAGCTGAAGGATTTCGTGAAACCCTTGGCGTATCGGCACACCGGCCTCGCAGAGTTGTTGGCAGAGGTTCGAGATTGATAGGTTCTGGTTCAGCAGTGCCTAAACTTGTGGTTTCAAACAACGATCTTTCTAAACTGGTGGATACTTCAGATGAATGGATCTCTTCTCGTACAGGGATCCGTAATCGACGGATTCTTTCAGGTGATGAAACACTAACTGGTTTAGCTATAGAGTCATCTAGAAAAGCCCTTGAAATGGCGAAAGTCAGGCCAGAGGATGTTGACTTGGTTTTGATGTGTACCTCTACTCCAGATGATCTATTTGGTGGTGCTCCCCAAGTGCAGAGGGAGGTGGGTTGTATAAAAGCCTTGGCTTTTGACATTACAGCTGCTTGTAGTGGCTTTGTGTTGGGTCTTGTAACAGCTACACGTTTCATAAAAGGTGGCGGATTTGAAAATGTTTTGGTTATTGGAGCTGATGCCCTTTCTAGATATGTTGATTGGACAGACCGGGGCTCCTGCATTCTTTTTGGGGATGGAGCTGGTGCTGTGCTGTTACAGGCAGCTAAAGGAGATCAGGATGGTCTACTGGGTTTTGATCTACAGACTGACGGGCATGGTCAAAAGCATTTGAGTCTCCCAACCATTGGAGAAGGTGCAGTGAAGGACTTGGGTAGCTCAAATGGTGCAGCACTGAAACCTCCAAAGCCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACAGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACCAGAGGATTATTAGTGCTGTAGCTGATCGGCTGCAGATTCAACCTGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAAGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAACGGCAGGTTTTGGAGCTGGAGTTACATGGGGTTCAGCCATTGTGAGATGGGATTGA___TTGAATATTGCTCACTTCAGGAATGGTAGACCAAGACAGCAGTGCTTGTCTGAAAAGGTTTTACTGCCACGAGGAAAAGTTGATTGAGAAATCTAGTTCCTCCACATATACCCATTGTTAATTTTTTGATTCTCGAGTTCTTTCCAAGCTCAATTACGGCAGCACTTGGGTTGCTTTGTTGTTTTCCTTAATTTCCATTTCATATTTTATAATTGTAACTTTGTTACGATAGAGTAATGCAAACAGAATGTTCCTGGCAGTGTGCTTGACTTGATGGATACTGGTTTTTAACGGCAATTAATAAAAGGCCTTTACTCCAAAGCCCAGCGTTACACTTAC

Fln Alignment:

sp_v1.1_unigene27346___MARASCLPTGSPLARESNCIPLISFLNGEISGIAVSVSLKISSTRSVRKGVRCAVAEGFRETLGVS--AHRPRRVVGRGSRLIGSGSAVPKLVVSNNDLSKLVDTSDEWISSRTGIRNRRILSGDETLTGLAIESSRKALEMAKVRPEDVDLVLMCTSTPDDLFGGAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDGAGAVLLQAAKGDQDGLLGFDLQTDGHGQKHLSLPTIGEGAVKDLGSSNGAALKPPKPSSHSCIQMNGKEVFRFAVNRVPQVXXXXXXXXXXXXSHLDWLLLHQANQRIISAVADRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ
B8LKT2_______________MARASYLPAGSCLARDSNSKPRISFLTGEISGTAVSVSLKVSATRSVYKGVRCAVAEGFRETLGVSNSARPPRRVVGRGSKLIGSGSAVPKLVVSNHDLSKLVDTSDEWISSRTGIHNRRILSGDETLTGLAVESSRKALEMAKVKPEDVDLVLMCTSTPDDLFGSAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDAAGAVLLQAVKGDQDGLLGFDLQSDGHGQKHLSVPAMGERAVKDLGSSNGAALKPPKPPSPSCIQMNGKEVFRFAVSRVPQVIEAAMEEAGMTGSHLDWLLLHQANQRIISAVADRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
243	80	20			0.999996
279		33		66	0.997452
282		66	33		0.997452
283		33		66	0.997452
1644			80	20	0.995493
1811	16	83			0.994512
1813			16	83	0.994512
1815			16	83	0.994512
2148	20		80		0.995493
2224	14	85			0.993533
2226	16		83		0.994512
2232	83			16	0.994512
2259		83		16	0.994512
2375	36		63		1.0
2478	20	40		40	1.0
2479	20	20			0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain