SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27339

Length: 1499 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27339

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein, putative	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif 2	IPR007201	-	0.0	80%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKG9

Fln msg: your sequence is shorter than subject: 269 - 892

Fln protein: PWLSLIGGHGIANSGLGISNNGIAENGSPSFGMRSPQHMSHVFLAGSVSNSGDGLNDRGRNRRSENSANQIDNKKQYQLDLEKLMRGEDSRTTLMIKNIPNKYTSKMLLAAIDENHRGSYDFLYLPIDFKNKCNVGYAFINMISPAHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKSALITHFQNSSLMNEDKRCRPILFHSEGPEAGDLEPFPMGVNPRARPNEGSNGDHPESPTGNGSKSDSVHAILESTPDGTPNFPGEDEQ*

Protein Length: 270

Fln nts: GACCTTGGCTGTCACTCATTGGTGGGCATGGCATTGCAAATTCTGGACTTGGCATTTCAAACAATGGCATTGCTGAAAATGGGTCTCCAAGTTTTGGAATGAGGTCTCCCCAACACATGAGTCATGTGTTTCTTGCAGGATCAGTAAGTAACTCTGGGGATGGACTAAATGACCGAGGAAGAAATAGGCGCAGTGAGAACAGTGCAAATCAAATAGATAACAAGAAGCAATATCAACTTGACTTGGAGAAGCTAATGCGTGGCGAAGATTCTCGTACGACACTCATGATAAAAAACATTCCGAACAAGTATACTTCAAAGATGCTATTAGCAGCTATTGATGAAAATCATCGTGGGAGTTATGATTTCCTCTACTTGCCTATTGATTTTAAGAATAAATGCAATGTTGGTTATGCTTTTATAAATATGATTTCTCCAGCTCATATCATTCCTTTCTACCAGGCATTCAACGGAAAGAAATGGGAGAAGTTCAATAGCGAAAAGGTTGCTTCCCTAGCATATGCTCGAATTCAGGGAAAATCTGCTTTGATAACACATTTTCAAAACTCTAGCTTGATGAATGAGGATAAGCGGTGCCGTCCTATTCTTTTTCACTCTGAGGGGCCAGAAGCAGGGGATCTGGAGCCATTCCCAATGGGTGTTAACCCTAGAGCCCGTCCAAATGAGGGTTCCAACGGAGATCACCCAGAAAGCCCAACAGGAAATGGAAGTAAAAGTGACTCGGTGCATGCAATTCTTGAAAGTACTCCTGATGGCACTCCAAATTTTCCGGGGGAAGATGAACAATAA___TACCTTTGCCGTCATGATTAACTACAACTATCAATATGAAATAAGGCAGTAATGCCCAATTCTTTCTTGACGCATGCAAGTGTATAAAAGAAGAGTGCCTCTCAAGTAGAAGCTTGTTGCAGGCTGTACATTCAAACAATTCTTTTTATTGACCAAACTGGCCATCTTTGGCAGCAATAGATGCTCGAGGTGTGTGCCTTGGTAGTCCCATTTGTGTAAAGAACGGCACAGTGAAATTAATTATCGTGCAGTCACGTCGTTTGCGTAAAGACGGGTACACAATTGGTTATTTTTGTGTTGCCAAGTTCTTGCAGGAGGCTCGAAGTAGCTTGAAGGATTTGAAAAGAAGTTTGATTCTTTTGTTGAATCCAACCTGAAATGTGTATAGAGGTGAGGGATCCAAGTTATCAAGTTCAGTAGAACTGTGGCCACGATACAGGCAAAACATTGATAATTTATTATCTTATCTATTTGACTGACGATCTTAGAATCGAAGAGTTTCAAATATGAACAGGGATATAGCAGCTTCATATTTGGTTTGGACGTTACACATGTAGCTGGATTTTTTTAATATAAATCCCTATTTGAGTCGTTTGATGGTCAAAACTCTACACTGATTTTATTCAGATTGTGTTGTTTATTTATCTTTCTTTAATCGGTTGGCTGTCAAAGATTTTGCTACATTAACTT

Fln Alignment:

sp_v1.1_unigene27339___IGGHGIANSG-LGISNNGIAENGSPSFGMRSPQHMSHVF----LAGSVSXXXXXXXXXXXXXXXENSANQIDNKKQYQLDLEKLMRGEDSRTTLMIKNIPNKYTSKMLLAAIDENHRGSYDFLYLPIDFKNKCNVGYAFINMISPAHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKSALITHFQNSSLMNEDKRCRPILFHSEGPEAGDLEPFPMGVNPRARPNEG-SNGDHPESPTGNGSKSDSV
B8LKG9_______________IGAHGVLNAGGVAISNNSNIECGSP-IGVLSPQRKSRMFSSGGFTGSIANFSEGLNERGRSRRGDNSTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDEHHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFPMGPDVKVHPSENLADGNARESPT-IANKDDSV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
712			66	33	0.997452
925		16		83	0.994512
928		16		83	0.994512
930		83		16	0.994512
931	83		16		0.994512
932	16		83		0.994512
933		16	83		0.994512
936			83	16	0.994512
937			16	83	0.994512
938	83		16		0.994512
940	83			16	0.994512
941			16	83	0.994512
945	83	16			0.994512
946	83			16	0.994512
1378	12			68	1.0
1405	10			90	0.90298
1413		28		71	1.0
1416	75		25		0.996473
1419	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain