SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27312

Length: 487 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene27312
CGTCGTGACCTTGGCTGTCACTCAAACTATTTTGAAGGTGCTTAACACTTCCTTCATCTACCTGATCCCCAAATAGGACAATGCTCAGACTCTAGATAGGTTTAGACCCATAGCCTTGTGCAATGTGGTATATAAGATAATATCCAAGGTTGTGGCTAACAGACTCAAACCACTTCTTCCTACTTTAGTTTCTGAGGAGCAATCTGGTTATGTGGAGGGCAGACAAATTCTTAATAACATCATTCAAGCGTGTGAGGTGGTGCACTCTTTGAAAAGCAATAGGAAGGCTGGTATGATTATGCAATTGGACCTAGCCAAAGCTTATGATAAGTTTAATTGGAACCTATATCAAGAAGGTCCTTCTAGCCTTTGGATTTGACCAGAACTGGGTAAGATGGGTTATGGCCCTAGTAACTTCTTCTAGCTTTTCAATTCTGGTTAATGGTTATCCATCAAAGACTTTTACTCCTTCAAGAGGCCTCAGGCA

Ace file of the UniGene sp_v1.1_unigene27312 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Beta vulgaris subsp. vulgaris.	-	-	50%
Blast2go	reverse transcriptase	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reverse transcriptase	IPR000477	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4NCJ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 716 aas, your sequence is shorter than subject: 126 - 1355

Fln protein: VVTLAVTQTILKVLNTSFIYLIPK*DNAQTLDRFRPIALCNVVYKIISKVVANRLKPLLPTLVSEEQSGYVEGRQILNNIIQACEVVHSLKSNRKAGMIMQLDLAKAYDKFNWNLYQEGPSSLWI*

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTATTTTGAAGGTGCTTAACACTTCCTTCATCTACCTGATCCCCAAATAGGACAATGCTCAGACTCTAGATAGGTTTAGACCCATAGCCTTGTGCAATGTGGTATATAAGATAATATCCAAGGTTGTGGCTAACAGACTCAAACCACTTCTTCCTACTTTAGTTTCTGAGGAGCAATCTGGTTATGTGGAGGGCAGACAAATTCTTAATAACATCATTCAAGCGTGTGAGGTGGTGCACTCTTTGAAAAGCAATAGGAAGGCTGGTATGATTATGCAATTGGACCTAGCCAAAGCTTATGATAAGTTTAATTGGAACCTATATCAAGAAGGTCCTTCTAGCCTTTGGATTTGACCAGAACTGGGTAAGATGGGTTATGGCCCTAGTAACTTCTTCTAGCTTTTCAATTCTGGTTAATGGTTATCCATCAAAGACTTTTACTCCTTCAAGAGGCCTCAGGCA

Fln Alignment:

sp_v1.1_unigene27312___LNTSFIYLIPK*DNAQTLDRFRPIALCNVVYKIISKVVANRLKPLLPTLVSEEQSGYVEGRQILNNIIQACEVVHSLK---SNRKAGMIMQLDLAKAYDKFNWNLYQE
F4NCJ0_______________INHTNIALIPKVKNPTTPAEFRPIALCNVVYKLVSKALVIRLKDFLPRLVSENQSAFVPGRLITDNALIAMEVFHSMKHRNRSRKGTIAMKLDMSKAYDRVEWGFLRK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
154	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain