SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27296

Length: 2135 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27296
CCTTGGCTGTCACTCATTTTTTCTTTTTCTTCCGCTGATATATTGCATTGGCTACCCCACACGCAGGGGACAATGCAGGAAGCCAAGCACGGCGATTCCATGGAAGAGTGGTCTGGCGATGCGTTCAGATCCATAGAAACCGAAAATAGCAGAAAATGGACCGAAGACTGGAGAGAATTTGAAAGCATTTTAGACACAGGCGTCAAGATTCTTAACCGAGAAGAAGACCATGGAAATAATGTAGCTTTGCCAAGAAAGCGCAGAGTTGCAGGTATAAGTTACAGTACCAGCGGGAATAGTAATCATCCTAATGAGGCGGAGGGGTTTCAAGAACAGCTTAAGGGATTCGTGAAATCTACTTGGGAACTGCTCGAGAAATTAGCTCAAGGTTGCCGAGATGTGGTTAGACAGAGCCTTGGCGGCGAGGATTCAGTGTTGGTGAGAAGAGTTGGCGGAATGTGGGCCAAATTTAGTCCGCACATGGAAGTAGTCAACCAATTTTTGCCAGAGGATCGAAATCCTGCTCATGTCTGGAGCGTCCTGCTTTTTGTTTTCTTCTTGACTGTTGCAGTGCTAAGAACAGGTATGGAGCAGCAAGAACCAGCTATTAAGGAGGTCTACTCACTTTCTATCACTGCTGATCGTATTCAACTTCCAGATGGGAGGTACATTGCTTATAGGGAAGAAGGGGTTTCAGCAAGCCTGGCCAGACATTCAATCTTAGTCATCCATTCCTTTGTTTCATCTCGTTTAGCAGGCATCCCTGGCATCAAACAGTCACTGCTTGAGGAATTTGGGGTTCGGCTTGTAGCATATGATCTGCCGGGATTTGGTGAAAGTGATCCCCATCCCCATCGAAATTTTACATCATCTGCCCTTGACATGATACATATTGCTGACACACTTGGCTTAGGTGAAAAGTTTTGGGTGCTTGGTTATTCTGTTGGAGGAATACATGCCTGGGCTGCTCTAAGATATATACCAGAGAGACTGGCGGGTGCTGCATTATTTGCTCCTATGGGGAATCCTTATGACCCAGATATGACCAAGGATGAAGTTCGCAAAATTTGGGAGAAGTGGACATTAAAGAAGAAGTTGGGTTTCATTCTTGCTAAACCAACTTCCTCTTTTCTTCCTTCCTTTTATAAAAGAAGTTTTGGGAAAGCAATAGATCATCCAATTAAATCTCTATCTTTCACACTTGGAAAGAAGGATGGAGCTTTGGTGGAGCAGGATCTCTTCATTGATTTTCTGCATAAGGACATGCAAGAGTCAGTACGACAAGGTAGTCCAGCACCATTTGTCGAGGAAACTATTATGCAAGTTAACAAATGGGGATTCAGCCTCGCAGATTTACAAGTAAGAAAGAAGCTGATGAAGGGTTTTACCTCGTGGATTCATTCCCTGTTTAATGAGGTGCAGGAAGAGTGGGAGGGCTTCCTTGGACCAATACATATTTGGCAGGGCATGGATGACCGTGTTGTACCCTATCCCTTCAATGACTATGCAAAACGTATGGTTCCAGGGGCGACTCTTCATAAATTGATCGGTGAAGGTCACTTTTCATATTTCTGCTTCTGTGATCAATGCCACAGGGAAATATTTGTTACTCTCTTTGGAATTCCAAAAGGTACAATCAGTGAAACGTTTGTTTCAGAATCAGTAGAAAATGGATAGTTGTAAGGAGATGATTAAATATATCCTGCAAAATACTTAACTTGCATTGTTGTAGGGTTATAGCTGTAGGTTCCTACTGGCTTTTTAACTAATAGGAACTCTGCAGCACAATGACCAAATCTGGTAACAGAAGCTGTATCTTTAGAGAATAATCATACATGTAAATTTGTGTGATAAGAGCATTACTTTGTCGGGACTATAGCTTCAGAAGATCATATGCCTTGTGCATAGCTTATTGTTTATATTGTAAGAGCTGAGAGTGCATATGATTGAAGCTTAGCACTTGAAAAGCTCTTCCAGAGTTGAAGGATAGAAAGAAATAATTTCTTGCAGAGAAACTATATTTCCGGATTGGTCTGGGTTCTGTCATAAAAGCAGGTCCATTTACTTACTGTGGCACATGCAAAACTCTGTACTTATATTTTGAGATTGATCAATAAAGTTTTCAGTTATGAATG

Ace file of the UniGene sp_v1.1_unigene27296

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, putative	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	alpha beta fold family protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT7

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 535 - 376

Fln protein: MQEAKHGDSMEEWSGDAFRSIETENSRKWTEDWREFESILDTGVKILNREEDHGNNVALPRKRRVAGISYSTSGNSNHPNEAEGFQEQLKGFVKSTWELLEKLAQGCRDVVRQSLGGEDSVLVRRVGGMWAKFSPHMEVVNQFLPEDRNPAHVWSVLLFVFFLTVAVLRTGMEQQEPAIKEVYSLSITADRIQLPDGRYIAYREEGVSASLARHSILVIHSFVSSRLAGIPGIKQSLLEEFGVRLVAYDLPGFGESDPHPHRNFTSSALDMIHIADTLGLGEKFWVLGYSVGGIHAWAALRYIPERLAGAALFAPMGNPYDPDMTKDEVRKIWEKWTLKKKLGFILAKPTSSFLPSFYKRSFGKAIDHPIKSLSFTLGKKDGALVEQDLFIDFLHKDMQESVRQGSPAPFVEETIMQVNKWGFSLADLQVRKKLMKGFTSWIHSLFNEVQEEWEGFLGPIHIWQGMDDRVVPYPFNDYAKRMVPGATLHKLIGEGHFSYFCFCDQCHREIFVTLFGIPKGTISETFVSESVENG*

Protein Length: 536

Fln nts: CCTTGGCTGTCACTCATTTTTTCTTTTTCTTCCGCTGATATATTGCATTGGCTACCCCACACGCAGGGGACA_-_ATGCAGGAAGCCAAGCACGGCGATTCCATGGAAGAGTGGTCTGGCGATGCGTTCAGATCCATAGAAACCGAAAATAGCAGAAAATGGACCGAAGACTGGAGAGAATTTGAAAGCATTTTAGACACAGGCGTCAAGATTCTTAACCGAGAAGAAGACCATGGAAATAATGTAGCTTTGCCAAGAAAGCGCAGAGTTGCAGGTATAAGTTACAGTACCAGCGGGAATAGTAATCATCCTAATGAGGCGGAGGGGTTTCAAGAACAGCTTAAGGGATTCGTGAAATCTACTTGGGAACTGCTCGAGAAATTAGCTCAAGGTTGCCGAGATGTGGTTAGACAGAGCCTTGGCGGCGAGGATTCAGTGTTGGTGAGAAGAGTTGGCGGAATGTGGGCCAAATTTAGTCCGCACATGGAAGTAGTCAACCAATTTTTGCCAGAGGATCGAAATCCTGCTCATGTCTGGAGCGTCCTGCTTTTTGTTTTCTTCTTGACTGTTGCAGTGCTAAGAACAGGTATGGAGCAGCAAGAACCAGCTATTAAGGAGGTCTACTCACTTTCTATCACTGCTGATCGTATTCAACTTCCAGATGGGAGGTACATTGCTTATAGGGAAGAAGGGGTTTCAGCAAGCCTGGCCAGACATTCAATCTTAGTCATCCATTCCTTTGTTTCATCTCGTTTAGCAGGCATCCCTGGCATCAAACAGTCACTGCTTGAGGAATTTGGGGTTCGGCTTGTAGCATATGATCTGCCGGGATTTGGTGAAAGTGATCCCCATCCCCATCGAAATTTTACATCATCTGCCCTTGACATGATACATATTGCTGACACACTTGGCTTAGGTGAAAAGTTTTGGGTGCTTGGTTATTCTGTTGGAGGAATACATGCCTGGGCTGCTCTAAGATATATACCAGAGAGACTGGCGGGTGCTGCATTATTTGCTCCTATGGGGAATCCTTATGACCCAGATATGACCAAGGATGAAGTTCGCAAAATTTGGGAGAAGTGGACATTAAAGAAGAAGTTGGGTTTCATTCTTGCTAAACCAACTTCCTCTTTTCTTCCTTCCTTTTATAAAAGAAGTTTTGGGAAAGCAATAGATCATCCAATTAAATCTCTATCTTTCACACTTGGAAAGAAGGATGGAGCTTTGGTGGAGCAGGATCTCTTCATTGATTTTCTGCATAAGGACATGCAAGAGTCAGTACGACAAGGTAGTCCAGCACCATTTGTCGAGGAAACTATTATGCAAGTTAACAAATGGGGATTCAGCCTCGCAGATTTACAAGTAAGAAAGAAGCTGATGAAGGGTTTTACCTCGTGGATTCATTCCCTGTTTAATGAGGTGCAGGAAGAGTGGGAGGGCTTCCTTGGACCAATACATATTTGGCAGGGCATGGATGACCGTGTTGTACCCTATCCCTTCAATGACTATGCAAAACGTATGGTTCCAGGGGCGACTCTTCATAAATTGATCGGTGAAGGTCACTTTTCATATTTCTGCTTCTGTGATCAATGCCACAGGGAAATATTTGTTACTCTCTTTGGAATTCCAAAAGGTACAATCAGTGAAACGTTTGTTTCAGAATCAGTAGAAAATGGATAGTTGTAAGGAGATGATTAAATATATCCTGCAAAATACTTAACTTGCATTGTTGTAGGGTTATAGCTGTAGGTTCCTACTGGCTTTTTAACTAATAGGAACTCTGCAGCACAATGACCAAATCTGGTAACAGAAGCTGTATCTTTAGAGAATAATCATACATGTAAATTTGTGTGATAAGAGCATTACTTTGTCGGGACTATAGCTTCAGAAGATCATATGCCTTGTGCATAGCTTATTGTTTATATTGTAAGAGCTGAGAGTGCATATGATTGAAGCTTAGCACTTGAAAAGCTCTTCCAGAGTTGAAGGATAGAAAGAAATAATTTCTTGCAGAGAAACTATATTTCCGGATTGGTCTGGGTTCTGTCATAAAAGCAGGTCCATTTACTTACTGTGGCACATGCAAAACTCTGTACTTATATTTTGAGATTGATCAATAAAGTTTTCAGTTATGAATG

Fln Alignment:

sp_v1.1_unigene27296___ITADRIQLPDGRYIAYREEGVSASLARHSILVIHSFVSSRLAGIPGIKQSLLEEFGVRLVAYDLPGFGESDPHPHRNFTSSALDMIHIADTLGLGEKFWVLGYSVGGIHAWAALRYIPERLAGAALFAPMGN---PYDPDMTKDEV---RKIWEKWTLK-------KKLGFILAK--PTSSFLPSFYKRSFGKAIDHPIKSLSFTLGKKDGALVEQDLFIDFLHKDMQESVRQGSPAPFVEETIMQVNKWGFSLADLQVRKKLMKGFTSWIHSLFNEVQEEWEGFLGPIHIWQGMDDRVVPYPFNDYAKRMVPGATLHKLIGEGH
A9NWT7_______________VTAPRIRLQDGRHLAYKESGVPRERAKYKIIMTHGFTGSRNDTFQA-SEELMEELGVYLVTFDRPGYGESDPHPKRSVRSAAFDIEEFADQLDLGPKFYVMGFSLGGHAIWGCLKYIPNRLAGAALLAPVINYRWPGFPANLSEEAYYEQARQDQWALRVPYYAPWLTYWWMSQKWFPSSSVIQGTWK---------PLNRHDRELGLKLAASGRSP-------ERLKAALQQGVFESLHRDLMVMFGKWDFDPMELNPFPN-------------NDV---------PVHIWQGDEDALVPVTLQRYIGEKLSWIHYHELPEVGH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2000	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain