SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27293

Length: 2074 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27293
CGTGACCTTGGCTGTCACTCAGGGGTTTCTCCTGTAAATATCCAAGCCCCACCAGTACTCTTATCCTGAGCTATTCCGCCAGTTGCATTCATTTCACTGTTACAATCAAACTGTTTGTTTATGCTCAAGCATCAGATCTGATCTGGGTTCTTCCACTGACCGAAGAAGCCTCGGCCCTCGATTTCCGACATCTCTCAGCAAAAGAAATGGTGGCCAAAGGAAATACCCTGCCGGACTATGAATGCCAGCCCTTGATCGAATATAGGACTGTTTCAGGAGTTGCAGGTCCTTTGGTTATTTTGGAAAAAGTGAAGGGTCCAAAATATCAGGAGATTGTCAACATTAGATTAGGGGATGGCACAACACGTCGAGGTCAGGTTTTGGAGGTTGATGGTGAAAGGGCTGTTGTGCAGGTATTTGAAGGAACGTCAGGAATTGATAATAAGCATACTACAATTCAATTTACTGGAGAGGTTTTGAAAACACCTGTATCTTTGGACATGCTTGGTCGCATATTTAATGGGTCAGGAAAGCCTATAGACAATGGTCCTCCTATATTGCCAGAGGCCTACTGTGATATCTCAGGTAGTTCCATTAATCCAAGTGAAAGAACCTATCCAGAAGAAATGATCCAAACTGGGATTTCTACAATAGATGTGATGAACTCAATTGCCCGTGGTCAGAAGATTCCTCTTTTCTCTGCTGCTGGTTTGCCACATAATGAGATTGCTGCTCAAATTTGCCGACAAGCAGGACTTGTGAAAAGACTGGAACAGTCTGACAATTTGTTAGAGGCTGTTGCAGAAGATAATTTTGCCATAGTTTTTGCAGCCATGGGAGTTAACATGGAAACTGCCCAATTTTTCAAGCGCGACTTTGAAGAAAATGGGTCAATGGAGAGAGTTACGCTATTTCTGAATTTGGCAAATGATCCAACTATTGAACGTATTATTACACCGAGGATTGCTTTGACAACAGCAGAATATCTTGCTTATGAATGTGGAAAGCATGTTTTGGTTATTTTGACAGACATGAGCTCATATGCAGATGCTTTGCGTGAAGTGTCTGCAGCTCGTGAAGAAGTGCCTGGTCGACGTGGTTATCCTGGGTACATGTATACTGACTTGGCAACGATTTATGAACGGGCAGGACGTATTGAAGGCCGAAAAGGCTCTATTACTCAGATTCCCATTCTGACCATGCCCAATGATGATATTACACACCCAATTCCAGATCTAACAGGTTACATCACAGAAGGGCAGATATATATTGACAGGCAACTTCATAATCGACAGATATACCCACCAATCAATGTTCTTCCATCTCTATCACGATTGATGAAGAGTGCTATAGGGGAGGGAATGACTCGACGGGATCATGCTGAAGTTTCAAATCAGCTATATGCAAATTATGCAATTGGAAAGGATGTACAAGCAATGAAGGCTGTGGTTGGAGAGGAGGCCTTGTCATCAGAGGATCTGCTGTACCTAGAATTTTTGGATAAGTTTGAACGCAAATTTGTCACACAAGGAGCATATGATACCCGTGACATTTATCAATCCTTGGATCTGGCGTGGACACTTCTACGTATCTTCCCAAGGGAGCTTCTCCACCGTATACCTGTAAAGACCTTAGACCTTTTCTACAGCAGGGATTCTGCACATTAAGTCTTAAGGTTATGGAAGTTTCACTTTGTTAGTCTGATTTTTTCTAGTCTTGTAATTTAAAATGGTCGGATCAAGTTTTGTGGCATTTTCATTCAAATCACCTAAGTAGGAAAAGGCAGAAATTATGGTCATCTGACATGAGGCATAATTTCTTGCGTGTATCATGGGCTTGTCCCTGAGATATTTTATAATAATTTTGAGGGTTTATACTACATCAACTGAGAACCTCAATTGCTTTTGGATATAGAATTGGTGTTCATGCATTATTGTGAATGCATTCTTGGGATGTATTCAATTAATGCAATATGAGATGCATGATTGTTTTATTGCTGGTCACATTATCTGTTTGCCTGTGGATGTTGATTGTTTATCTCTAGTTGAAGTTTGAATGTCTAGAAATTAAGTTT

Ace file of the UniGene sp_v1.1_unigene27293

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	V-type proton ATPase subunit B2 n=33 Tax=Magnoliophyta RepID=VATB2_ARATH	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	ATP metabolic process	GO:0046034	Biological Process	97%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	97%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	97%
Blast2go	vacuole	GO:0005773	Cellular Component	97%
Blast2go	proton-transporting two-sector ATPase complex	GO:0016469	Cellular Component	97%
Blast2go	plasma membrane	GO:0005886	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	97%
Blast2go	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	97%
Blast2go	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	97%
Blast2go	ATPase, V1 complex, subunit B	IPR005723	-	97%
Blast2go	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	IPR020003	-	97%
Blast2go	V-type ATP synthase regulatory subunit B/beta	IPR022879	-	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVU9

Fln msg:

Fln protein: MVAKGNTLPDYECQPLIEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGERAVVQVFEGTSGIDNKHTTIQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYCDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEQSDNLLEAVAEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPIPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHAEVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRDIYQSLDLAWTLLRIFPRELLHRIPVKTLDLFYSRDSAH*

Protein Length: 488

Fln nts: CGTGACCTTGGCTGTCACTCAGGGGTTTCTCCTGTAAATATCCAAGCCCCACCAGTACTCTTATCCTGAGCTATTCCGCCAGTTGCATTCATTTCACTGTTACAATCAAACTGTTTGTTTATGCTCAAGCATCAGATCTGATCTGGGTTCTTCCACTGACCGAAGAAGCCTCGGCCCTCGATTTCCGACATCTCTCAGCAAAAGAA_-_ATGGTGGCCAAAGGAAATACCCTGCCGGACTATGAATGCCAGCCCTTGATCGAATATAGGACTGTTTCAGGAGTTGCAGGTCCTTTGGTTATTTTGGAAAAAGTGAAGGGTCCAAAATATCAGGAGATTGTCAACATTAGATTAGGGGATGGCACAACACGTCGAGGTCAGGTTTTGGAGGTTGATGGTGAAAGGGCTGTTGTGCAGGTATTTGAAGGAACGTCAGGAATTGATAATAAGCATACTACAATTCAATTTACTGGAGAGGTTTTGAAAACACCTGTATCTTTGGACATGCTTGGTCGCATATTTAATGGGTCAGGAAAGCCTATAGACAATGGTCCTCCTATATTGCCAGAGGCCTACTGTGATATCTCAGGTAGTTCCATTAATCCAAGTGAAAGAACCTATCCAGAAGAAATGATCCAAACTGGGATTTCTACAATAGATGTGATGAACTCAATTGCCCGTGGTCAGAAGATTCCTCTTTTCTCTGCTGCTGGTTTGCCACATAATGAGATTGCTGCTCAAATTTGCCGACAAGCAGGACTTGTGAAAAGACTGGAACAGTCTGACAATTTGTTAGAGGCTGTTGCAGAAGATAATTTTGCCATAGTTTTTGCAGCCATGGGAGTTAACATGGAAACTGCCCAATTTTTCAAGCGCGACTTTGAAGAAAATGGGTCAATGGAGAGAGTTACGCTATTTCTGAATTTGGCAAATGATCCAACTATTGAACGTATTATTACACCGAGGATTGCTTTGACAACAGCAGAATATCTTGCTTATGAATGTGGAAAGCATGTTTTGGTTATTTTGACAGACATGAGCTCATATGCAGATGCTTTGCGTGAAGTGTCTGCAGCTCGTGAAGAAGTGCCTGGTCGACGTGGTTATCCTGGGTACATGTATACTGACTTGGCAACGATTTATGAACGGGCAGGACGTATTGAAGGCCGAAAAGGCTCTATTACTCAGATTCCCATTCTGACCATGCCCAATGATGATATTACACACCCAATTCCAGATCTAACAGGTTACATCACAGAAGGGCAGATATATATTGACAGGCAACTTCATAATCGACAGATATACCCACCAATCAATGTTCTTCCATCTCTATCACGATTGATGAAGAGTGCTATAGGGGAGGGAATGACTCGACGGGATCATGCTGAAGTTTCAAATCAGCTATATGCAAATTATGCAATTGGAAAGGATGTACAAGCAATGAAGGCTGTGGTTGGAGAGGAGGCCTTGTCATCAGAGGATCTGCTGTACCTAGAATTTTTGGATAAGTTTGAACGCAAATTTGTCACACAAGGAGCATATGATACCCGTGACATTTATCAATCCTTGGATCTGGCGTGGACACTTCTACGTATCTTCCCAAGGGAGCTTCTCCACCGTATACCTGTAAAGACCTTAGACCTTTTCTACAGCAGGGATTCTGCACATTAA___GTCTTAAGGTTATGGAAGTTTCACTTTGTTAGTCTGATTTTTTCTAGTCTTGTAATTTAAAATGGTCGGATCAAGTTTTGTGGCATTTTCATTCAAATCACCTAAGTAGGAAAAGGCAGAAATTATGGTCATCTGACATGAGGCATAATTTCTTGCGTGTATCATGGGCTTGTCCCTGAGATATTTTATAATAATTTTGAGGGTTTATACTACATCAACTGAGAACCTCAATTGCTTTTGGATATAGAATTGGTGTTCATGCATTATTGTGAATGCATTCTTGGGATGTATTCAATTAATGCAATATGAGATGCATGATTGTTTTATTGCTGGTCACATTATCTGTTTGCCTGTGGATGTTGATTGTTTATCTCTAGTTGAAGTTTGAATGTCTAGAAATTAAGTTT

Fln Alignment:

sp_v1.1_unigene27293___MVAKGNTLPDYECQPLIEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGERAVVQVFEGTSGIDNKHTTIQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYCDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEQSDNLLEAVAEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPIPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHAEVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRDIYQSLDLAWTLLRIFPRELLHRIPVKTLDLFYSRDSAH
A9NVU9_______________MVAKGDALRDYECQPLIEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGERAVVQVFEGTSGIDNKHTTIQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYCDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEQSENLLEAVAEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPIPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRDIYQSLDLAWTLLRIFPRELLHRIPVKTLDLFYSRDSAH

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
284	88		11		0.923564
1529	88			11	0.923564
1532	88		11		0.923564
1555	85		14		0.999981
1666	97		2		0.975753
1667	94	4	1		0.999876
1941		23		76	1.0
1983		21		78	1.0
2001	20		80		0.995493
2008			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain