SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27266

Length: 507 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene27266
CGTCGTGACCTTGGCTGTCACTCAACTTCTGTTAATGTGTGCGATCTGCAAGGATCCGCTTTCCGTGGGAGAGTTGGCAAAGCAGCTGCCTTGTCGTCGTGACCTTGCATGTCGACTGCATTCTTCCCTGGTTAATCTCTCGAAATTCATGCCCCTTATGTAGATACGAGCTTCCTACTGACGATCCCGCTTATGAAGAGCAGAGGAAACAGGGGGCATCCTTGCGAACATAATTTGCGCTGTGCAGATGACCTCTCAACAATGGTATTCTCTTATATTATGTGTTGGCTGAAAACAACTTTTATTCTGTCCTATTTGTAGATATTCTTTTGAAGTACTCCAGATAAGATGCTGTTAAGAAATATGACTTGATCATATACAGGTACTGTGGGCTGTTTTGCTCAAGCAGTATTGTTAAGATTGATTTGATTGGGGGTAACGTTGGCAGTAACTCCAACCATAAAATATCTCAATAAAAACAATGTGAGCTTCGCAGTGAGTGACAGG

Ace file of the UniGene sp_v1.1_unigene27266 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative	-	-	5.0e-13	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	zinc finger	-	-	2.42655e-17	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	2.42655e-17	81%
Blast2go	protein binding	GO:0005515	Molecular Function	2.42655e-17	81%
Blast2go	cytoplasm	GO:0005737	Cellular Component	2.42655e-17	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNA0

Fln msg: Separated hits, possible frame ERROR between 94 and 108, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 67 - 97

Fln protein: MCAICKDPLSVGELAKQLPxxxxxxHVDCILPWLISRNSCPLCRYELPTDDPAYEEQRKQGASLRT*

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCTGTTA_-_ATGTGTGCGATCTGCAAGGATCCGCTTTCCGTGGGAGAGTTGGCAAAGCAGCTGCCTTGxxxxxxxxxxxxxxxGCATGTCGACTGCATTCTTCCCTGGTTAATCTCTCGAAATTCATGCCCCTTATGTAGATACGAGCTTCCTACTGACGATCCCGCTTATGAAGAGCAGAGGAAACAGGGGGCATCCTTGCGAACATAA___TTTGCGCTGTGCAGATGACCTCTCAACAATGGTATTCTCTTATATTATGTGTTGGCTGAAAACAACTTTTATTCTGTCCTATTTGTAGATATTCTTTTGAAGTACTCCAGATAAGATGCTGTTAAGAAATATGACTTGATCATATACAGGTACTGTGGGCTGTTTTGCTCAAGCAGTATTGTTAAGATTGATTTGATTGGGGGTAACGTTGGCAGTAACTCCAACCATAAAATATCTCAATAAAAACAATGTGAGCTTCGCAGTGAGTGACAGG

Fln Alignment:

sp_v1.1_unigene27266___LLMCAICKDPLSVGELAKQLPCxxxxxHVDCILPWLISRNSCPLCRY-----ELPTDDPAYEEQRKQGASLR
B8LNA0_______________VIMCAICMDSLSVGELVKRLPCxxxxxHVDCILPLLSSRNLCPLCRYELPTNELPTDDPAYEEQRKQGASSR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
389			64	35	1.0
390		50	35		1.0
392	50		50		1.0
394		42	7		1.0
395		42	57		1.0
396	50		42	7	1.0
399		7	42	42	1.0
400		42	57		1.0
401	50	50			1.0
402	50			42	1.0
405		46	53		1.0
409		53		46	1.0
411	53	46			1.0
421	80	20			0.995493
422		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain