SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27264

Length: 912 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27264

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9R9V0_RICCO	-	-	49%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	38%
Blast2go	receptor protein kinase clavata1	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 425 aas, your sequence is shorter than subject: 302 - 998

Fln protein: VTLAVTQFIPWQLSNIARLEQLDLSRNMLTGPIPKELSTLRRLTTLNLMSNKLSGGIPKGIADLPNLQILYIWNNSLTGSIPEQLGRNSRLVEFDASTNQLTGPIPSDLCAGNKLERLILFSNQLTGEIPQNLTNCAPLYRVRMAHNNLSGRIPLGFGKLQNLNYMEFPWNNFSGPFPSDLLNSPSLQLLNVSHNSLQGSLPPNIWSSPSLQIFSAAFSNLSGKLPSFEHCNSVYKLELQGNSFSGSIPKDIANCQKLLTISLSQNELTGVIPPGIASLPSITSIDLSENALTGTIPLRSE*

Protein Length: 303

Fln nts: GTGACCTTGGCTGTCACTCAATTCATCCCATGGCAGTTGAGCAATATTGCAAGATTGGAGCAATTGGATTTGTCTCGAAACATGCTCACTGGACCGATTCCTAAAGAACTTTCGACACTCAGAAGGCTGACAACACTGAATTTGATGAGCAATAAACTCAGTGGAGGCATCCCTAAGGGAATTGCTGATCTGCCTAATCTGCAAATTTTGTATATCTGGAACAATTCCCTCACAGGAAGCATTCCTGAGCAGTTGGGTAGAAATTCTAGGTTAGTAGAATTTGATGCATCTACTAATCAATTAACGGGACCCATCCCCTCTGACCTGTGTGCAGGCAACAAGTTAGAAAGACTTATCCTTTTTTCTAATCAATTAACCGGAGAAATCCCTCAGAATCTTACAAATTGTGCCCCTCTGTATAGGGTCCGGATGGCTCATAACAATCTTAGTGGCCGCATTCCTTTAGGTTTTGGAAAGCTTCAAAACCTAAATTACATGGAATTCCCATGGAACAATTTTAGCGGGCCTTTTCCTTCTGATCTCTTAAATTCACCTAGTTTGCAACTCCTTAATGTTTCTCATAATTCTCTCCAAGGCAGCCTCCCTCCAAATATCTGGTCTTCTCCGAGCCTGCAAATATTTTCAGCAGCTTTCTCAAATTTATCAGGCAAACTTCCCTCCTTTGAACATTGCAATTCTGTATACAAGCTTGAACTTCAGGGAAATAGCTTTTCGGGTAGTATTCCCAAAGATATTGCCAATTGCCAAAAGCTCTTGACCATTTCCTTGAGCCAAAATGAGTTGACTGGTGTGATCCCTCCTGGGATAGCAAGTCTTCCCAGCATCACTAGCATTGATCTGTCTGAAAATGCCCTCACTGGCACGATTCCCCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene27264___IPWQLSNIARLEQLDLSRNMLTGPIPKEXXXXXXXXXXXXXXXKLSGGIPKGIADLPNLQILYIWNNSLTGSIPEQLGRNSRLVEFDASTNQLTGPIPSDLCAGNKLERLILFSNQLTGEIPQNLTNCAPLYRVRMAHNNLSGRIPLGFGKLQNLNYMEFPWNNFSGPFPSDLLNSPSLQLLNVSHNSLQGSLPPNIWSSPSLQIFSAAFSNLSGKL-PSFEHCNSVYKLELQGNSFSGSIPKDIANCQKLLTISLSQNELTGVIPPGIASLPSITSIDLSENALTGTIP
Q19AV8_______________IPVAMGELKALKRFDASMNMLNGSIPA-GLGSLNLESLNLYQNDLVGEIPPGLGSFASLTELKLFSNRLTGRLPESLGRYSDLQALDIADNLLSGSLPPDLCKNKKLEILSIFNNVFAGNIPESLGTCTSLNRVRLGGNKFNGSVPSSFWGLPHISLLELKDNNFEGLISPDIANAKCLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIP

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
235	83		16		0.994512
236		83		16	0.994512
237	71	14		14	0.984337
239			71	28	1.0
240	85		14		0.993533
241	85	14			0.993533
242		14	85		0.993533
244	71	14		14	0.984337
246			14	85	0.993533
247		71	28		1.0
252			71	28	1.0
255		28	71		1.0
258	28			71	1.0
384			88	11	0.923564
385	88	11			0.923564
387	88			11	0.923564
388	88		11		0.923564
393		88		11	0.923564
395		88	11		0.923564
396	88		11		0.923564
397		11	88		0.923564
398	88			11	0.923564
399	88		11		0.923564
402	11			88	0.923564
403		11		88	0.923564
404	88			11	0.923564
422		11		88	0.923564
423	88		11		0.923564
425	88	11			0.923564
427			88	11	0.923564
429	11			88	0.923564
434	88	11			0.923564
437			88	11	0.923564
439	11			88	0.923564
443	88	11			0.923564
461	83		16		0.999991
463			16	83	0.999991
464	16	83			0.999991
466		18		81	0.999994
469	80		20		0.999996
471		22	77		0.999999
473			22	77	0.999999
475		22		77	0.999999
476	22		77		0.999999
477		22	77		0.999999
478	77			22	0.999999
479	77	22			0.999999
662	88			11	0.999952
854	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain