SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27254

Length: 1700 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27254

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial dicarboxylate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SXH6_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Mitochondrial carrier protein	IPR002067	-	84%
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	84%
Blast2go	Mitochondrial carrier domain	IPR023395	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg:

Fln protein: MGFKGFLEGGIASVIAGCSTHPLDLIKVRMQLQGEQNIRPAFAFANVGAGLPAAELAPQKKVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLLAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTIVLFVTLEQVRKIFKDFDF*

Protein Length: 317

Fln nts: CGTGACCTTGGCTGTCACTCAACATTCATTCAGGCATCTACATTCCCTCTCTGCTGGGTCAGTAATATTACAGGAACACAGATCAGAGAGGGTTTTTGTAGATTCTTCAATTATTTTGGGCACTTGAATTGCATATGTCTCAGAGGAAGCACGATCCGCATCCTTGCTCAAGCGCTTTCGGCTTGCATTCCCATCGCCTGGTCTCCAGTGAGATGAACCCCAGCTCTAATTGGTCTCTGTGATCCATCTTTCATTCCCTTATTTGCTTTCTTTATATAAACGAGGGGAGAAATTAGTCGGTCTTGTAACAGGACGAAGCGGCTGTGATTACGGCGAGCGAGAGAGCTTACGAAGGAGTTGTTCTTTTGTTGGGTGCTGAAGGGATTCTTGTTCCAGAAAA_-_ATGGGCTTCAAGGGTTTTCTGGAAGGAGGGATTGCCTCGGTTATCGCAGGATGTAGCACGCACCCTCTGGATCTGATAAAAGTACGCATGCAGCTACAAGGCGAGCAAAATATTCGCCCCGCATTTGCCTTTGCTAATGTGGGCGCTGGTTTACCAGCGGCGGAATTAGCCCCCCAGAAGAAGGTTGGTCCGATCTCTGTAGGAATCCGCGTGGTTCAGACGGAGGGGGTGTCTGCGCTCTTTTCTGGTGTCTCTGCGACAATGCTCCGGCAGGTCCTGTACTCGACCACTCGCATGGGCTTATATGAGATTCTGAAGGAGAAGTGGCGGGAGCCGGGTTCGAAACCGGGGAACCTGCCCCTTGTCAAGAAGATCGCCGCGGGGTTGCTCGCTGGCGGTATCGGCGCCGCTGTGGGTAACCCTGCAGATGTGGCGATGGTGAGGATGCAAGCCGATGGGCGCCTCCCGGTTGCCCAGAGGCGCAACTACACGAGCGTTGCCGACGCCATCGGTCGCATGGTTCGACAGGAGGGTGTCACTTCGCTATGGACAGGGTCATCCTTAACGGTCCAGAGGGCCATGATCGTGACGGCCTCGCAGCTGGCCTCCTATGATCAGATCAAGGAGACCATCATCTCACATGATATTATGAAGGACGGTCTAGGCACGCATGTCACAGCTAGCTTCAGTGCAGGGTTTGTGGCTGCCGTGGCTTCGAATCCCGTGGACGTTATCAAGACCCGGATCATGAATATGAACCCTAAACCAGGAGAGCCTGCACCTTATTCCGGAGCCCTGGATTGTGCCATGAAGACCATAAAGGCGGAAGGCCCTATGGCTCTTTACAAGGGATTTATTCCCACTGTGACGAGACAAGGTCCTTTTACTATCGTTCTTTTCGTCACTCTGGAGCAAGTTAGGAAGATTTTTAAAGATTTCGATTTTTAG___ATTCTATTTTATATCATAGGTAACTCTGCTACCTATTCAGTATTAGGGGTTCTGTATGCCTGTAGTTTTGGTCCCTGCTTGCAGATCTTGATGATGATGATGAAAAATATTGATTAAATAAATATATTATTGTTTAGAATGGATGTTGTGGTATAACTTGGAATCTCCTGTGTCAATATAATAGTAGAAGACTGGAAGGAGATAATTTTAATGGTTCAAGTATAATTTATATCTTTGTTTATCAATTTGTTGCTATTTTGACAGTAAATTAAGGTGCTTGATCCGGTGGGATAATCTGAATCTTGGAGATCACAGGAATTTGGAAGCACTCGGCTCACCGTAATAGACGCTG

Fln Alignment:

sp_v1.1_unigene27254___MGFKGFLEGGIASVIAGCSTHPLDLIKVRMQLQGEQNIRPAFAFANVGAGLPAAELAPQKKVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLXXXXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISHDIMKDGLGTHVTXXXXXXXXXXXXXNPVDVIKTRIMNMNPKPGEPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTIVLFVTLEQVR
C0PSC7_______________MGVKGFVEGGIASVVAGCSTHPLDLIKVRMQLQGEQNVRPAFAFANVGAGCPAAELAHQK-VGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLTAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISRDIMKDGLGTHVTASFSAGFVAAVASNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTVVLFVTLEQVR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
196			25	75	0.996473
247		12		87	0.992554
289			12	87	0.992554
384	11		88		0.923564
391		11		88	0.923564
497		87		12	0.992554
546	14	85			0.993533
551			16	83	0.994512
573	16	83			0.994512
1414		23		76	1.0
1449	3			90	0.996531
1450	3		90		0.997073
1485	12		87		0.992554
1488		14		85	0.993533
1545	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1437	1451	TGA TGA TGA TGA TGA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain