SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27251

Length: 314 nt

UniGene Fasta

>sp_v1.1_unigene27251
CGTGACCTTGGCTGTCACTCATTTATGCCATGGAGTTGGCCTTGTCTCTGGAGAAACTTACGAATCAAAAACTTCTGAACTTGCACGTTGTAGCCCAAGAGGCCAACGATGGTCAGATGACGGATTTCATCGAGGGCGAATTTCTCTCCCAACAGGTTGAAACCATCAAGAAAGTATCAGAGTATGTGTCTCAGTTGAGAAGGATAGGCAAAGGCCACGCTGTATGGCATTTTGATCAGATGCTCCTCAATGGAGGTGATGTAGCTGCTGCCCCAGACGCAGGAGCTCTGGCTGCTGCTTGAGTTGATTGAGAA

Ace file of the UniGene sp_v1.1_unigene27251

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI	-	-	1.0e-31	87%
FL-Next	sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	ferritin	-	-	6.21242e-32	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	6.21242e-32	89%
Blast2go	response to iron ion	GO:0010039	Biological Process	6.21242e-32	89%
Blast2go	flower development	GO:0009908	Biological Process	6.21242e-32	89%
Blast2go	response to bacterium	GO:0009617	Biological Process	6.21242e-32	89%
Blast2go	iron ion homeostasis	GO:0055072	Biological Process	6.21242e-32	89%
Blast2go	iron ion transport	GO:0006826	Biological Process	6.21242e-32	89%
Blast2go	leaf development	GO:0048366	Biological Process	6.21242e-32	89%
Blast2go	response to zinc ion	GO:0010043	Biological Process	6.21242e-32	89%
Blast2go	photosynthesis	GO:0015979	Biological Process	6.21242e-32	89%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	6.21242e-32	89%
Blast2go	metal ion binding	GO:0046872	Molecular Function	6.21242e-32	89%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	6.21242e-32	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	6.21242e-32	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ferritin	IPR001519	-	6.21242e-32	89%
Blast2go	Ferritin/DPS protein domain	IPR008331	-	6.21242e-32	89%
Blast2go	Ferritin- like diiron domain	IPR009040	-	6.21242e-32	89%
Blast2go	Ferritin/ribonucleotide reductase-like	IPR009078	-	6.21242e-32	89%
Blast2go	Ferritin-related	IPR012347	-	6.21242e-32	89%
Blast2go	Ferritin, conserved site	IPR014034	-	6.21242e-32	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 100 - 289

Fln protein: *PWLSLIYAMELALSLEKLTNQKLLNLHVVAQEANDGQMTDFIEGEFLSQQVETIKKVSEYVSQLRRIGKGHAVWHFDQMLLNGGDVAAAPDAGALAAA*

Protein Length: 101

Fln nts: CGTGACCTTGGCTGTCACTCATTTATGCCATGGAGTTGGCCTTGTCTCTGGAGAAACTTACGAATCAAAAACTTCTGAACTTGCACGTTGTAGCCCAAGAGGCCAACGATGGTCAGATGACGGATTTCATCGAGGGCGAATTTCTCTCCCAACAGGTTGAAACCATCAAGAAAGTATCAGAGTATGTGTCTCAGTTGAGAAGGATAGGCAAAGGCCACGCTGTATGGCATTTTGATCAGATGCTCCTCAATGGAGGTGATGTAGCTGCTGCCCCAGACGCAGGAGCTCTGGCTGCTGCTTGA___GTTGATTGAGAA

Fln Alignment:

sp_v1.1_unigene27251___IYAMELALSLEKLTNQKLLNLHVVAQEANDGQMTDFIEGEFLSQQVETIKKVSEYVSQLRRIGKGHAVWHFDQMLLN
C0PRI0_______________LYAMELALSLEKLTNQKLLNLHTVAQEANDGQMTDFIEGNFLTDQVQAIKKVSEYASQLRRIGQGHGVWHFDQMLLN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
138	33		66		0.997452
140	66	33			0.997452
146		66	33		0.997452
147			33	66	0.997452
152	66	33			0.997452
162	66		33		0.997452
164		66		33	0.997452
182	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain