SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27226

Length: 2067 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27226
GTGACCTTGGCTGTCACTCATTTATTTTTTTAGTTAACGACACAGAGAGGTTTATCGATTTCGATGGCCCTAACCTAATTAAAATTCAAAGTTTGGATTGCAAAGAGTCCAATCAGATTTTTCACCGCGGCTTTTTCCTCTCTTGAAAATTAACAATCTGTAATCAGGATAAGTGTGCCATGCTGTGATAAGATCTGATAGGGGGCAGTTGCGTCCTACAATCAATCGCTGGTTACCAACTCGACTCAACTGATAGTTAAAGCCAAGTGTTAAATGTCATACCTTTGATTCCATAACCATTTTTCGGACACGTACATGGTGTAAACTATATATATGTGTGTGTGTAGAAGTGGGTCATCATAGATTCACAAGTGTGATTACTTATTTCTGTCATTCAGATTTCATAATACACTGTAATTGTGGTCTCAGCCATGGCGAGTGAGCAGGTTTGTGTTAGCAATGGGTCTGGTTTGAAGCATAGCAATGGTCATGTAAAGAAGGAGGCGACCAGGTGCAATCCTGTGTTATTGGAATACAGCAGCAGCATACGCGGTGTTCTTGCCTACTTGTTAGCCCGAGTATGTCCTGAAAAGAGTATGATTCCCATCGGTCATGGGGATGCTTCTTCCTTCAAATGCTTCAGGACGCCAATCAATGTAGAGGACGCCATCATAGAATCGACGAGGAGCTGCAAGTATAACGGCTATGCTCCTTCTTATGGTTTACTCGAAACTCGCGGTGCTGTTGCAGAATATGTTTCCTCAGGCCTACCTTATAAGCTTACTTCAAATGATGTGTACCTCACAGTTGGTTGCTCGCAAGCTATACAAGTGTGCATGCAAGTATTGGCCACTAAAGGCTCAAATATACTCCTACCACGACCAGGATTTCCAGTTTATGAAACTGCTTGTGGTTACAATGGCATTGAAATCCGGTTTTATGACTTGATTCCAGAGAATAACTGGGAAGTTGACTTGGATCAAGTAGAGGCATTGGCTGATGACAAAACTGTGGCAATGGTTATCATTAATCCAAGCAATCCTTGTGGTGCTGTCTTCTCCTATGAACACCTATTACAGATTGCAAAAACCGCAGGACACTTAGGAATCCCTATTATTTCAGATGAAGTATATGCGCACATGGTCTTTGGAGGGAGTAAATTTGAGCCTATGGCAAAATTTGCTTCCATCACACCAGTCATTACTCTTGGAGGAATTTCAAAGCGATGGTTAATTCCTGGTTGGCGGTTTGGATGGCTCGTTGCTTGTGATCCTCATGACATTCTTAAACAAGGCAAGATCCAAGAAGGAGTCGAGATGCTCATGAACATAACTCCTGGTCCTACAACGATTGTGCAGGCAGCTGTTCCAAGTATTTTACGAGACACCAGCCAAGAATTTTTTGAGCAGACGTTACACTTATTGGAAACAGCAGCAGACATTTGCTACAATCGAATCCAGAAAATTAACGTCGTGACCTTGGCTGTCACTCAAGGCCGAAGGGATCTATGTTTATCATGGTGAAGATAAATATATCAGCCCTTAACGACATCAAGGATGACATGGAGTTTGCTTCAGCACTAGTTAAGGAAGAATCAGTGGTGGTTCTGCCAGGTTCCACACTCGGGATGAAAAATTGGATAAGAATATCATTTGGAGCTCCTTCTGCTACATTGGAAGAGGCGTGGGATAGAATTGAATCGTTCTGCCAGAAGCATTCTAATACCATATAAATTTTAATGGTCCTTCTCATCTCTATCATCTTAGAGTAATGTTTATCCTCGACCGTATTTATTTTCACCGCGATCAGTAGATTTATTACCAAATACTTAGTGGCCGATTATGGGATTATCTCGTTAACTGAAGAATGCGATGGGACGCAGTCTTCTAAAACTGTAGATTTTTGAAGAATGCCTTAGTGTAGATTTTACATTTATTCATTGATGGTTCTGTATTGCTATCCCAATCATGGGATGAGGTAAATTATTACCATCTCCATATGAACTTTAACTTATTACCAAGCAATCAATATATAGTGTTTACGCTTTTTTCAAATTAACAGGTGATC

Ace file of the UniGene sp_v1.1_unigene27226

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aminotransferase family protein n=1 Tax=Populus trichocarpa RepID=B9MYE9_POPTR	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	aminotransferase family protein	-	-	72%

Source	InterPros	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	72%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	72%
Blast2go	Tyrosine/nicotianamine aminotransferase	IPR005958	-	72%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	72%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	72%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	72%
Blast2go	Tyrosine transaminase	IPR021178	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC1

Fln msg: Separated hits, possible frame ERROR between 1469 and 1478,

Fln protein: MASEQVCVSNGSGLKHSNGHVKKEATRCNPVLLEYSSSIRGVLAYLLARVCPEKSMIPIGHGDASSFKCFRTPINVEDAIIESTRSCKYNGYAPSYGLLETRGAVAEYVSSGLPYKLTSNDVYLTVGCSQAIQVCMQVLATKGSNILLPRPGFPVYETACGYNGIEIRFYDLIPENNWEVDLDQVEALADDKTVAMVIINPSNPCGAVFSYEHLLQIAKTAGHLGIPIISDEVYAHMVFGGSKFEPMAKFASITPVITLGGISKRWLIPGWRFGWLVACDPHDILKQGKIQEGVEMLMNITPGPTTIVQAAVPSILRDTSQEFFEQTLHLLETAADICYNRIQKIxxxxLGCHSRPKGSMFIMVKINISALNDIKDDMEFASALVKEESVVVLPGSTLGMKNWIRISFGAPSATLEEAWDRIESFCQKHSNTI*

Protein Length: 435

Fln nts: GTGACCTTGGCTGTCACTCATTTATTTTTTTAGTTAACGACACAGAGAGGTTTATCGATTTCGATGGCCCTAACCTAATTAAAATTCAAAGTTTGGATTGCAAAGAGTCCAATCAGATTTTTCACCGCGGCTTTTTCCTCTCTTGAAAATTAACAATCTGTAATCAGGATAAGTGTGCCATGCTGTGATAAGATCTGATAGGGGGCAGTTGCGTCCTACAATCAATCGCTGGTTACCAACTCGACTCAACTGATAGTTAAAGCCAAGTGTTAAATGTCATACCTTTGATTCCATAACCATTTTTCGGACACGTACATGGTGTAAACTATATATATGTGTGTGTGTAGAAGTGGGTCATCATAGATTCACAAGTGTGATTACTTATTTCTGTCATTCAGATTTCATAATACACTGTAATTGTGGTCTCAGCC_-_ATGGCGAGTGAGCAGGTTTGTGTTAGCAATGGGTCTGGTTTGAAGCATAGCAATGGTCATGTAAAGAAGGAGGCGACCAGGTGCAATCCTGTGTTATTGGAATACAGCAGCAGCATACGCGGTGTTCTTGCCTACTTGTTAGCCCGAGTATGTCCTGAAAAGAGTATGATTCCCATCGGTCATGGGGATGCTTCTTCCTTCAAATGCTTCAGGACGCCAATCAATGTAGAGGACGCCATCATAGAATCGACGAGGAGCTGCAAGTATAACGGCTATGCTCCTTCTTATGGTTTACTCGAAACTCGCGGTGCTGTTGCAGAATATGTTTCCTCAGGCCTACCTTATAAGCTTACTTCAAATGATGTGTACCTCACAGTTGGTTGCTCGCAAGCTATACAAGTGTGCATGCAAGTATTGGCCACTAAAGGCTCAAATATACTCCTACCACGACCAGGATTTCCAGTTTATGAAACTGCTTGTGGTTACAATGGCATTGAAATCCGGTTTTATGACTTGATTCCAGAGAATAACTGGGAAGTTGACTTGGATCAAGTAGAGGCATTGGCTGATGACAAAACTGTGGCAATGGTTATCATTAATCCAAGCAATCCTTGTGGTGCTGTCTTCTCCTATGAACACCTATTACAGATTGCAAAAACCGCAGGACACTTAGGAATCCCTATTATTTCAGATGAAGTATATGCGCACATGGTCTTTGGAGGGAGTAAATTTGAGCCTATGGCAAAATTTGCTTCCATCACACCAGTCATTACTCTTGGAGGAATTTCAAAGCGATGGTTAATTCCTGGTTGGCGGTTTGGATGGCTCGTTGCTTGTGATCCTCATGACATTCTTAAACAAGGCAAGATCCAAGAAGGAGTCGAGATGCTCATGAACATAACTCCTGGTCCTACAACGATTGTGCAGGCAGCTGTTCCAAGTATTTTACGAGACACCAGCCAAGAATTTTTTGAGCAGACGTTACACTTATTGGAAACAGCAGCAGACATTTGCTACAATCGAATCCAGAAAATTAAxxxxxxxxxCCTTGGCTGTCACTCAAGGCCGAAGGGATCTATGTTTATCATGGTGAAGATAAATATATCAGCCCTTAACGACATCAAGGATGACATGGAGTTTGCTTCAGCACTAGTTAAGGAAGAATCAGTGGTGGTTCTGCCAGGTTCCACACTCGGGATGAAAAATTGGATAAGAATATCATTTGGAGCTCCTTCTGCTACATTGGAAGAGGCGTGGGATAGAATTGAATCGTTCTGCCAGAAGCATTCTAATACCATATAA___ATTTTAATGGTCCTTCTCATCTCTATCATCTTAGAGTAATGTTTATCCTCGACCGTATTTATTTTCACCGCGATCAGTAGATTTATTACCAAATACTTAGTGGCCGATTATGGGATTATCTCGTTAACTGAAGAATGCGATGGGACGCAGTCTTCTAAAACTGTAGATTTTTGAAGAATGCCTTAGTGTAGATTTTACATTTATTCATTGATGGTTCTGTATTGCTATCCCAATCATGGGATGAGGTAAATTATTACCATCTCCATATGAACTTTAACTTATTACCAAGCAATCAATATATAGTGTTTACGCTTTTTTCAAATTAACAGGTGATC

Fln Alignment:

sp_v1.1_unigene27226___MASEQVCVSNGSGLKH---SNGHVKKEATRCNPVLLEYSSSIRGVLAYLLARVCPEKSMIPIGHGDASSFKCFRTPINVEDAIIESTRSCKYNGYAPSYGLLETRGAVAEYVSSGLPYKLTSNDVYLTVGCSQAIQVCMQVLATKGSNILLPRPGFPVYETACGYNGIEIRFYDLIPENNWEVDLDQVEALADDKTVAMVIINPSNPCGAVFSYEHLLQIAKTAGHLGIPIISDEVYAHMVFGGSKFEPMAKFASITPVITLGGISKRWLIPGWRFGWLVACDPHDILKQGKIQEGVEMLMNITPGPTTIVQAAVPSILRDTSQEFFEQTLHLLETAADICYNRIQKINxxxLGCHSRPKGSMFIMVKINISALNDIKDDMEFASALVKEESVVVLPGSTLGMKNWIRISFGAPSATLEEAWDRIESFCQKHSNT
A9NVC1_______________MASEQVSVSNGSGLKQVSVSNGCVKKEVSRCNPVLLEYSSSIRGVLAYLLARVCPEKSMIPIGHGDASSFKCFRTPINVEDAIIESTRSCKYNGYAPSYGLLETRGAVAEYVSSGLPYKLTYNDVYLTVGCSQAIQVCMQVLATKGSNILLPRPGFPVYETACGYSGIEIRFYDLIPENNWEVDLDQVEALTDEKTVAMVIINPSNPCGAVFSYEHLSQIAKTAGHLGIPIVSDEVYAHMVFGGSKFEPMAKFASITPVITLGGISKRWLIPGWRFGWLVACDPHGILKRGKVQEGVEMLMNITPGPTTIVQAAVPSILQDTSQEFFEQTLHLLETAADICYNRIQKINxxxLWCHSRPKGSMFIMVKINISALEDIKDDMEFASALVKEESVVVLPGSTLGMKNWIRISFGAPSATLEEAWDRIGSFCQRHSNT

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
837	80		20		0.999996
843			88	11	0.923564
845	88	11			0.923564
846			11	88	0.923564
847		11		88	0.923564
848	11		88		0.923564
850		88		11	0.923564
851		88	11		0.923564
853		88	11		0.923564
856	88	11			0.923564
863	87		12		0.992554
876	11	88			0.923564
902	87			12	0.992554
919	87		12		0.992554
923		85		14	0.993533
945	14			85	0.993533
997	12	87			0.992554
998		28		71	1.0
1022		20		80	0.995493
1092	16		83		0.994512
1099	83		16		0.994512
1111		83		16	0.994512
1116	83		16		0.994512
1136	12		87		0.992554
1142			87	12	0.992554
1478		76		23	1.0
1479	23			76	1.0
1721	94	5			0.998397
1722	94		5		0.998397
1731	92		7		0.999602
1732	92		7		0.999602
1733	92	7			0.999602
1735			9	90	0.999842
1737		9		90	0.999842
1739	90	9			0.999842
1924	88		11		0.923564
2039		14		85	0.993533
2050		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain