SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27210

Length: 1991 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27210
CGTGACCTTGGCTGTCACTCAGTTATCGTAGTAGCAGAGCAGTTCGCTGGGGATCGCATCCAGAAAAGCTTTGAAGATGGAGTGGAGGAGAATACTCTTGTGTTTCGTAGTTTCGTTGTATTTTTTCTCTTCTGTTTCTTGTGCTGATGATGGACTTGTAAGGGTCGGGCTGAAGAAGAAGTCTCTGGATCTTAAAACCCTACGGGCTGCTAAAGCTTCGATGCGTAACGGCTGTCATGCGGACGCACTCATTCGGAAATTTGGTCTGCGCGAAGGTCGGGGTTTCGAGTCTGACGAGGGCGATTATGTTCCTTTGAAGAATTACTTGGACGCTCAGTATTTCGGAGAGATTGGAATTGGAACTCCAGCTCAGACTTTTACGGTCATATTTGATACCGGCAGCTCAAATCTTTGGGTGCCGTCTTCTAAATGTTACTTCTCGTTGGCTTGCTATTTCCATTCAAAGTACAAGGCATCCGAGTCAAGCACCTACAAAAAGAATGGAAAATCCTGTGATATTCAGTATGGAAGTGGTGCAATCTCTGGATACTTGTCTCAAGATGATGTCACAGTAGGGGACCTTGTTGTGAAAGACCAGGTTTTTACCGAGACAACACGGGAGCCAAGTCTAACATTCTTACTGGCCAAGTTTGATGGTCTTCTTGGGCTTGGATTTCAAGAAATTGCTGTTGACAAAGTTGTTCCAGTCTGGTATAACATGGTCAGCCAAGGGCTTGTCAAAGAACCAGTCTTTTCATTTTGGATGAACAGGAATTCAGAAGAGGAAGCTGGAGGAGAGATAGTATTTGGCGGTGTTGATCCTGAACACTTCAAGGGTGAACATCAGTATACACCTGTTACTCGAAAGGGTTACTGGCAGTTTGATATGGGAGACTTCCTCATTGATGATCAATCAACAGGTTTCTGTGCTGGAGGTTGTGCTGCTATTGTAGATTCTGGAACTTCTTTGCTCGCTGGTCCATCGGGCATTATAACACAAATTAACAATGCTATTGGTGCCTCGGGTATTATTAGCCAGGAATGCAAAACAGTAGTATCACAATACGGAGATGTGATTATGGAGCTCTTGATGGCACAGACAAATCCTCAGAAGATCTGCTCACAGATTGGCTTGTGCTCTTATGATGGTACAAGAGATGTTAGCACAGGAATAGCTAGTGTCTTGGAAAAATCCGGTGAAAAGGATACAATGTCGAGCATCGGTGATGGTATGTGCACTGCTTGTCAGATGGCGGTTGTGTGGGTGCAGAACCAAATTGCTCGTAACCAGACTAAGGAGCAGATTAAGGCCTATATGAATCAGCTCTGTGAACGATTGCCAAGCCCTAATGGAGAATCAGTTGTTGATTGCGATCAAATATCAAGCATGCCAACTGTTTCATTTTCGATTGGAAATAAAACATTCAGTCTCACACCAGATCAGTATATTCTTAAAGTTGGTGAAGGTTCTGTAGCGCAGTGTGTAAGTGGTTTTATGGGTTTGGATGTCCCTCCACCGTTGGGTCCTATATGGATTCTTGGAGATATTTTCATGGGCGTCTACCACACAGTGTTTGATTATGGAAACTTGAGAGTGGGATTTGCTGAAGCTGTTTGAAGATGGACATATAATGTTATATGGCGCGACAGTGCAATATTTTTATTACTCTCTCGTGTGCAGTGTAGATGGAACCACGCATTTTACTTCAAGAATGCTTTATTTCGGTGCCCTTGTTGATACATATTCTCTTGTATAGCGAAGCTTAGTCTCTATAGATACTATTGAAATATTTTTAAGTACAGGAAAGATTATTGTATATAGTTAAATATTTTGCTTAAAATCTAGATGTTAGAAGAACGCTGTTTTGGAAATTTGATACAATATGTTTTCATTCTAATTTGTATAATATAAACCAAGATATGTTCTAAGACATGTTTGCTTACAATTGCTTGTAAACCAATGCTAATGGGTAGAATTCGCTGCTGCTACC

Ace file of the UniGene sp_v1.1_unigene27210

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase precursor, putative (EC:3.4.23.40); K08245 phytepsin [EC:3.4.23.40]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	aspartic proteinase	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:3.4.23.4-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS9

Fln msg:

Fln protein: MEWRRILLCFVVSLYFFSSVSCADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGFESDEGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPVTRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIISQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSYDGTRDVSTGIASVLEKSGEKDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMPTVSFSIGNKTFSLTPDQYILKVGEGSVAQCVSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEAV*

Protein Length: 515

Fln nts: CGTGACCTTGGCTGTCACTCAGTTATCGTAGTAGCAGAGCAGTTCGCTGGGGATCGCATCCAGAAAAGCTTTGAAG_-_ATGGAGTGGAGGAGAATACTCTTGTGTTTCGTAGTTTCGTTGTATTTTTTCTCTTCTGTTTCTTGTGCTGATGATGGACTTGTAAGGGTCGGGCTGAAGAAGAAGTCTCTGGATCTTAAAACCCTACGGGCTGCTAAAGCTTCGATGCGTAACGGCTGTCATGCGGACGCACTCATTCGGAAATTTGGTCTGCGCGAAGGTCGGGGTTTCGAGTCTGACGAGGGCGATTATGTTCCTTTGAAGAATTACTTGGACGCTCAGTATTTCGGAGAGATTGGAATTGGAACTCCAGCTCAGACTTTTACGGTCATATTTGATACCGGCAGCTCAAATCTTTGGGTGCCGTCTTCTAAATGTTACTTCTCGTTGGCTTGCTATTTCCATTCAAAGTACAAGGCATCCGAGTCAAGCACCTACAAAAAGAATGGAAAATCCTGTGATATTCAGTATGGAAGTGGTGCAATCTCTGGATACTTGTCTCAAGATGATGTCACAGTAGGGGACCTTGTTGTGAAAGACCAGGTTTTTACCGAGACAACACGGGAGCCAAGTCTAACATTCTTACTGGCCAAGTTTGATGGTCTTCTTGGGCTTGGATTTCAAGAAATTGCTGTTGACAAAGTTGTTCCAGTCTGGTATAACATGGTCAGCCAAGGGCTTGTCAAAGAACCAGTCTTTTCATTTTGGATGAACAGGAATTCAGAAGAGGAAGCTGGAGGAGAGATAGTATTTGGCGGTGTTGATCCTGAACACTTCAAGGGTGAACATCAGTATACACCTGTTACTCGAAAGGGTTACTGGCAGTTTGATATGGGAGACTTCCTCATTGATGATCAATCAACAGGTTTCTGTGCTGGAGGTTGTGCTGCTATTGTAGATTCTGGAACTTCTTTGCTCGCTGGTCCATCGGGCATTATAACACAAATTAACAATGCTATTGGTGCCTCGGGTATTATTAGCCAGGAATGCAAAACAGTAGTATCACAATACGGAGATGTGATTATGGAGCTCTTGATGGCACAGACAAATCCTCAGAAGATCTGCTCACAGATTGGCTTGTGCTCTTATGATGGTACAAGAGATGTTAGCACAGGAATAGCTAGTGTCTTGGAAAAATCCGGTGAAAAGGATACAATGTCGAGCATCGGTGATGGTATGTGCACTGCTTGTCAGATGGCGGTTGTGTGGGTGCAGAACCAAATTGCTCGTAACCAGACTAAGGAGCAGATTAAGGCCTATATGAATCAGCTCTGTGAACGATTGCCAAGCCCTAATGGAGAATCAGTTGTTGATTGCGATCAAATATCAAGCATGCCAACTGTTTCATTTTCGATTGGAAATAAAACATTCAGTCTCACACCAGATCAGTATATTCTTAAAGTTGGTGAAGGTTCTGTAGCGCAGTGTGTAAGTGGTTTTATGGGTTTGGATGTCCCTCCACCGTTGGGTCCTATATGGATTCTTGGAGATATTTTCATGGGCGTCTACCACACAGTGTTTGATTATGGAAACTTGAGAGTGGGATTTGCTGAAGCTGTTTGA___AGATGGACATATAATGTTATATGGCGCGACAGTGCAATATTTTTATTACTCTCTCGTGTGCAGTGTAGATGGAACCACGCATTTTACTTCAAGAATGCTTTATTTCGGTGCCCTTGTTGATACATATTCTCTTGTATAGCGAAGCTTAGTCTCTATAGATACTATTGAAATATTTTTAAGTACAGGAAAGATTATTGTATATAGTTAAATATTTTGCTTAAAATCTAGATGTTAGAAGAACGCTGTTTTGGAAATTTGATACAATATGTTTTCATTCTAATTTGTATAATATAAACCAAGATATGTTCTAAGACATGTTTGCTTACAATTGCTTGTAAACCAATGCTAATGGGTAGAATTCGCTGCTGCTACC

Fln Alignment:

sp_v1.1_unigene27210___ADDGLVRVGLKKKSLDLKTLRAAKASMRNGCHADALIRKFGLREGRGF-ESDEGDYVPLKNYLDAQYFGEIGIGTPAQTFTVIFDTGSSNLWVPSSKCYFSLACYFHSKYKASESSTYKKNGKSCDIQYGSGAISGYLSQDDVTVGDLVVKDQVFTETTREPSLTFLLAKFDGLLGLGFQEIAVDKVVPVWYNMVSQGLVKEPVFSFWMNRNSEEEAGGEIVFGGVDPEHFKGEHQYTPVTRKGYWQFDMGDFLIDDQSTGFCAGGCAAIVDSGTSLLAGPSGIITQINNAIGASGIISQECKTVVSQYGDVIMELLMAQTNPQKICSQIGLCSYDGTRDVSTGIASVLEKSGEKDTMSSIGDGMCTACQMAVVWVQNQIARNQTKEQIKAYMNQLCERLPSPNGESVVDCDQISSMPTVSFSIGNKTFSLTPDQYILKVGEGSVAQCVSGFMGLDVPPPLGPIWILGDIFMGVYHTVFDYGNLRVGFAEA
B8LKS9_______________ANDCLARIELKKKGLDQKTLQAARIVAREGGLSNEVNRKYGLRGGLSYSESARGEYVPLKNYLDAQYYGEIGLGTPPQKFTVIFDTGSSNLWVPSTKCYLSIACYFHSKYKASQSSSYCVNGKPFNIQYGSGSVSGYLGQDHVTAGDLVVKDQVFAEVTQEPGLTFLAAKFDGILGLGFQKISVGNVVPVWYNMVNQGLIKEPVFSFWMNRKVGDEEGGEIVFGGVDPNHFKGKHTYVPVTREGYWQFNMGDFLIGGQSTGFCSGGCAAIVDSGTSLLAGPSGIVAQINEAIGASGLASQECKSVVSQYGDLIMELLMAQTNPQKVCSQIGLCLSDGTRDVGMRIASVLEKGNEATSTSS--SGMCAACEMAVVWAKNQIARNASKDQIMTYLNQLCDRLPNPNGQAAVDCNNLSSMPTVSFTIGDRSFDLTPDQYILKVGEGSAAQCISGFMGLDVPPPMGPIWILGDVFMGVYHTVFDFGNMRVGFTEA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
76			33	66	0.997452
151		33		66	0.997452
1820	78		21		1.0
1897		9		90	0.999872
1935		16		83	0.994512
1937	20			80	0.995493
1938	20			80	0.995493
1939	20			80	0.995493
1940	20		80		0.995493
1942		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain