SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27197

Length: 2946 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27197
GTGACCTTGGCTGTCACTCATTTTTGTGCAACGAGGGTTTGGGAGTAACTCCGCGGGAGCTTCGAAGTCCACCCGTTCTGTTGCGGATGGACAGTTTCCATATTGCCTGTTTTTTTGTTTGGATTCGTGGCTGCATATCGGATACTGGAAAGAAAATTGACGGATTTTGATGATCTTTAGTGGATTTAAAGGATCCCGAGGATTTTTTTTCGCTCCCTTTTTTTGTCCAGAAATTGGAACTGCAGAGTAAAGCATTGTCGGTTCCGTGAACAGAGGGTGGATTTAGGGTTAAATTGCGGTATATTTATTCATGTATTGGTGCAGAATGATTTGATTATATAAAGGTTTGCTGAAAATCTACCGGGCTTTGGCTTAAACTGGATATTGTATATTAATTGAAGTGTGCTGAGCTACTTATTTTGCACAAAATAAGCTGAGCTCAGCGCCTTAATTTATTACACAGTACATAATTTGTGCCCTTGACTTTGAGCTTTCCCTGTGAAACATTTATTCTGTATCCCGACGGGTTCCGATTCGGTGGCCTCCTGCAACTCTTACAATTTTCGGGCTCTTTTAGCGGCTGTCTTGTCGCATCAATTTTTAAAGGGGAAGATTTGCTCTATGGGAGAGTGCTAGGGGGTCCTCTACAATGTGTAGAGGATCCCTTCTTTCGGCTTTATTATTTCCTTTCTGTGGCTACTCATCGGAGTTTTTATTTTGTGGGGCCCACTTTGAGAAGCGGTTACTGGTGAAATTACACAGAATGCTCTCAGGAACAAGATAGCATTGGGGTATCTATCTGCTGGACATTTGACTTTTATCCAAGTTTAACAGGAAGGTAGAACAAATGTTTCCGGCAGGAGGTGAACAGGGCTCATCAGGAGGAGTTGTACCCTCAGTACCTACACGCTTTGTTTGGCCCCATGGAGGACGCCGTGTATTTCTTGTTGGATCATTCACAAGGTGGGTTGACACATTGCCAATGTCTCCTGTTGAAGGATGCCCATCTGTTTTTCAAGTTATTTACAACTTGCCACCAGGATATCATCAGTACAAGTTTATCGTTGATGGAGAATGTAGGCATGATGAGGGACAATCTGTCATTACACCTACCTTTGGGACTGTCAACAATGTTTTGTTTGTTAATGGGCCGGAACTTTTACCTACATCTGTAAGTCCAGAGCATTTGGTATCAAGATCCCGCATGGATGTAGATCCTGATGTCTTTCAGAAGGTGGAGATAGTCCAGAGGATTTCAGAAGACGAGATAGAAGTTTCACGACGCCAAATTGCAGATATTTTATCTGCACGCACTGCTTACGATTTGATGCCCGAGTCAGGCAAGGTAGTGGCTCTGGATATTAATTTGCCTGTGAAGCAAGCATTCCATGCACTTTACGAACAGGGTATTTCTGTGGCTCCTTTATTGGATTCCAAGGGAGAGATTGTAGGTATGCTCAGTGCTGCAGACTTCATCACAATCCTAAGAGAGCTTGGAAATTATGGAGCAATTCTCTCGAAGGAAGAGCTTGAAACACATACCATTGCTGCTTGGAAAGATCAAAAGTTGTTTATTAAGAGACAACAATCTGATCAGTCTATGCCACCATTTCGGAGACCTCTTGTATATGTAAGCCCTTATGATTCTCTGAAGGATGTTGCACAGAGAATTTTGCAAAATGAGGTTGCTACAGTACCTGTCATATATTCTTCAACACAAGATGGCTCATGTCCACAACTATTGCACGTTGCATCTCTTTCTGAAATACTAAAATGTATATGCAGACATTTCAGACATGCTGCTAGTTCTATGGCACTCCTACAGCAGCCCATTTATGTGTTGCCCATAGGTACATGGATACCAGAAATTGGGAATGGAGGTGGTCGCCCTTTGGCAATGCTTCGGCCAATTGAATCCCTTAGTTCTGCTCTTACTCTTTTACTTGAAGCTCATGTTAGCGCAATCCCAATAGTTAATGACAATGGTTCACTACTGGATATATATTCTAGAAGTGACATTACAGCTTTGGCAAAAGATAGAGCATATGCCCAAGTGCAACTTGACAAAATGAATATTCAACAGGCATTGCAATTAGGGCAAGATAGAAGTACGTCTGGTGGTTCTTATGGTGGACTGAGATTCCACATGTGCTTACGCTCTGACACCCTTCAAAAAGTGATGGAGTGTTTAGCTAACCCTGGTGTCCGGCGGCTCATATGTGTGGAAGCTGGCAGTAACCGCGTTGAAGGCATTATCTCTTTAAGTGACATTTTTAAATTTCTTCTGGGCTAGTTTCACATATTATTCTTTGAATCCGGATGGTCAAAATGTAATTTCATTTTTGCCTGTCACAAGTGGTTGAGAGGCTGCTGTTGGGGCATTGTGATTCACTGGTTTATGAGCCAGGTTCTTCTGTCTGCCTTTATTTTAACTTCTCTGCTTGAGAAGGCTCTGATGCTATTTTGATTGACGTGAGCTTTAGTTATCAACTGTATTGCCCCGATGGCTTAAATGTCAATCTCTCTTGATAAGTATCGCAGGAAGGCTTTGCAAATGATGGAGTCAGCTGTTTCCCCAATCACATCCTTATCACAGAGATGCCTGTGAAATATCCAGTTAACATTGTAATTTGAAGAATATGAAGAGTCCTTACATTATTTAACAACGGAAGAGTATACTTATTCATTAAGAAATTCATTTCTTAAGCTATATTGCCTTCCCCCTGTTTTCGGGTTTGACTGTCAAATGTTCGAGGGACCGTTGCTATGATTAGCATGAACTGTCCTTTTCTCACATGGCGGTTTAGCTTTCTGTTTGCAAATGTTTCTCATAGCCTTCCTTGAGAGGGATTTACTGCAACCATGTTACTGGAGATGCTTCTTGAGTTGGAGAAATTTAATTATTAGTTGATGTTAGGTCCTTTGGAAGCAGATGATTATATTTCC

Ace file of the UniGene sp_v1.1_unigene27197

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SNF4; SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator	-	-	63%
FL-Next	sp=Sucrose nonfermenting 4-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to glucose starvation	GO:0042149	Biological Process	0.0	74%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q944A6

Fln msg:

Fln protein: MFPAGGEQGSSGGVVPSVPTRFVWPHGGRRVFLVGSFTRWVDTLPMSPVEGCPSVFQVIYNLPPGYHQYKFIVDGECRHDEGQSVITPTFGTVNNVLFVNGPELLPTSVSPEHLVSRSRMDVDPDVFQKVEIVQRISEDEIEVSRRQIADILSARTAYDLMPESGKVVALDINLPVKQAFHALYEQGISVAPLLDSKGEIVGMLSAADFITILRELGNYGAILSKEELETHTIAAWKDQKLFIKRQQSDQSMPPFRRPLVYVSPYDSLKDVAQRILQNEVATVPVIYSSTQDGSCPQLLHVASLSEILKCICRHFRHAASSMALLQQPIYVLPIGTWIPEIGNGGGRPLAMLRPIESLSSALTLLLEAHVSAIPIVNDNGSLLDIYSRSDITALAKDRAYAQVQLDKMNIQQALQLGQDRSTSGGSYGGLRFHMCLRSDTLQKVMECLANPGVRRLICVEAGSNRVEGIISLSDIFKFLLG*

Protein Length: 483

Fln nts: GTGACCTTGGCTGTCACTCATTTTTGTGCAACGAGGGTTTGGGAGTAACTCCGCGGGAGCTTCGAAGTCCACCCGTTCTGTTGCGGATGGACAGTTTCCATATTGCCTGTTTTTTTGTTTGGATTCGTGGCTGCATATCGGATACTGGAAAGAAAATTGACGGATTTTGATGATCTTTAGTGGATTTAAAGGATCCCGAGGATTTTTTTTCGCTCCCTTTTTTTGTCCAGAAATTGGAACTGCAGAGTAAAGCATTGTCGGTTCCGTGAACAGAGGGTGGATTTAGGGTTAAATTGCGGTATATTTATTCATGTATTGGTGCAGAATGATTTGATTATATAAAGGTTTGCTGAAAATCTACCGGGCTTTGGCTTAAACTGGATATTGTATATTAATTGAAGTGTGCTGAGCTACTTATTTTGCACAAAATAAGCTGAGCTCAGCGCCTTAATTTATTACACAGTACATAATTTGTGCCCTTGACTTTGAGCTTTCCCTGTGAAACATTTATTCTGTATCCCGACGGGTTCCGATTCGGTGGCCTCCTGCAACTCTTACAATTTTCGGGCTCTTTTAGCGGCTGTCTTGTCGCATCAATTTTTAAAGGGGAAGATTTGCTCTATGGGAGAGTGCTAGGGGGTCCTCTACAATGTGTAGAGGATCCCTTCTTTCGGCTTTATTATTTCCTTTCTGTGGCTACTCATCGGAGTTTTTATTTTGTGGGGCCCACTTTGAGAAGCGGTTACTGGTGAAATTACACAGAATGCTCTCAGGAACAAGATAGCATTGGGGTATCTATCTGCTGGACATTTGACTTTTATCCAAGTTTAACAGGAAGGTAGAACAA_-_ATGTTTCCGGCAGGAGGTGAACAGGGCTCATCAGGAGGAGTTGTACCCTCAGTACCTACACGCTTTGTTTGGCCCCATGGAGGACGCCGTGTATTTCTTGTTGGATCATTCACAAGGTGGGTTGACACATTGCCAATGTCTCCTGTTGAAGGATGCCCATCTGTTTTTCAAGTTATTTACAACTTGCCACCAGGATATCATCAGTACAAGTTTATCGTTGATGGAGAATGTAGGCATGATGAGGGACAATCTGTCATTACACCTACCTTTGGGACTGTCAACAATGTTTTGTTTGTTAATGGGCCGGAACTTTTACCTACATCTGTAAGTCCAGAGCATTTGGTATCAAGATCCCGCATGGATGTAGATCCTGATGTCTTTCAGAAGGTGGAGATAGTCCAGAGGATTTCAGAAGACGAGATAGAAGTTTCACGACGCCAAATTGCAGATATTTTATCTGCACGCACTGCTTACGATTTGATGCCCGAGTCAGGCAAGGTAGTGGCTCTGGATATTAATTTGCCTGTGAAGCAAGCATTCCATGCACTTTACGAACAGGGTATTTCTGTGGCTCCTTTATTGGATTCCAAGGGAGAGATTGTAGGTATGCTCAGTGCTGCAGACTTCATCACAATCCTAAGAGAGCTTGGAAATTATGGAGCAATTCTCTCGAAGGAAGAGCTTGAAACACATACCATTGCTGCTTGGAAAGATCAAAAGTTGTTTATTAAGAGACAACAATCTGATCAGTCTATGCCACCATTTCGGAGACCTCTTGTATATGTAAGCCCTTATGATTCTCTGAAGGATGTTGCACAGAGAATTTTGCAAAATGAGGTTGCTACAGTACCTGTCATATATTCTTCAACACAAGATGGCTCATGTCCACAACTATTGCACGTTGCATCTCTTTCTGAAATACTAAAATGTATATGCAGACATTTCAGACATGCTGCTAGTTCTATGGCACTCCTACAGCAGCCCATTTATGTGTTGCCCATAGGTACATGGATACCAGAAATTGGGAATGGAGGTGGTCGCCCTTTGGCAATGCTTCGGCCAATTGAATCCCTTAGTTCTGCTCTTACTCTTTTACTTGAAGCTCATGTTAGCGCAATCCCAATAGTTAATGACAATGGTTCACTACTGGATATATATTCTAGAAGTGACATTACAGCTTTGGCAAAAGATAGAGCATATGCCCAAGTGCAACTTGACAAAATGAATATTCAACAGGCATTGCAATTAGGGCAAGATAGAAGTACGTCTGGTGGTTCTTATGGTGGACTGAGATTCCACATGTGCTTACGCTCTGACACCCTTCAAAAAGTGATGGAGTGTTTAGCTAACCCTGGTGTCCGGCGGCTCATATGTGTGGAAGCTGGCAGTAACCGCGTTGAAGGCATTATCTCTTTAAGTGACATTTTTAAATTTCTTCTGGGCTAG___TTTCACATATTATTCTTTGAATCCGGATGGTCAAAATGTAATTTCATTTTTGCCTGTCACAAGTGGTTGAGAGGCTGCTGTTGGGGCATTGTGATTCACTGGTTTATGAGCCAGGTTCTTCTGTCTGCCTTTATTTTAACTTCTCTGCTTGAGAAGGCTCTGATGCTATTTTGATTGACGTGAGCTTTAGTTATCAACTGTATTGCCCCGATGGCTTAAATGTCAATCTCTCTTGATAAGTATCGCAGGAAGGCTTTGCAAATGATGGAGTCAGCTGTTTCCCCAATCACATCCTTATCACAGAGATGCCTGTGAAATATCCAGTTAACATTGTAATTTGAAGAATATGAAGAGTCCTTACATTATTTAACAACGGAAGAGTATACTTATTCATTAAGAAATTCATTTCTTAAGCTATATTGCCTTCCCCCTGTTTTCGGGTTTGACTGTCAAATGTTCGAGGGACCGTTGCTATGATTAGCATGAACTGTCCTTTTCTCACATGGCGGTTTAGCTTTCTGTTTGCAAATGTTTCTCATAGCCTTCCTTGAGAGGGATTTACTGCAACCATGTTACTGGAGATGCTTCTTGAGTTGGAGAAATTTAATTATTAGTTGATGTTAGGTCCTTTGGAAGCAGATGATTATATTTCC

Fln Alignment:

sp_v1.1_unigene27197___GEQGSSGGVVPSVPTRFVWPHGGRRVFLVGSFTRWVDTLPMSPVEGCPSVFQVIYNLPPGYHQYKFIVDGECRHDEGQSVITPTFGTVNNVLFVNGPELLPTSVSPEHLVSRSRMDVDPDVFQKV-----EIVQRISEDEIEVSRRQIADILSARTAYDLMPESGKVVALDINLPVKQAFHALYEQGISVAPLLD-SKGEIVGMLSAADFITILRELGNYGAILSKEELETHTIAAWKDQKLFIKRQQSDQSMPPFRRPLVYVSPYDSLKDVAQRILQNEVATVPVIYSSTQDGSCPQLLHVASLSEILKCICRHFRHAASSMALLQQPIYVLPIGTWIPEIGNGGGRPLAMLRPIXXXXXXXXXXXXXHVSAIPIVNDNGSLLDIYSRSDITALAKDRAYAQVQLDKMNIQQALQLGQDRSTSGGSYGGLRFHMCLRSDTLQKVMECLANPGVRRLICVEAGSNRVEGIISLSDIFKFLLG
Q944A6_______________GNSAASGQLL--TPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTI-FITGPDMVPAGFSPETL-GRSNMDVD-DVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHISRQY-DGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLG

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
298		16	83		0.994512
299			83	16	0.994512
301	83		16		0.994512
302			16	83	0.994512
303	83	16			0.994512
305			16	83	0.994512
308		16		83	0.994512
614			16	83	0.994512
615			16	83	0.994512
616			16	83	0.994512
635	83		16		0.994512
641		14		85	0.993533
696		20	80		0.995493
698		80		20	0.995493
699			20	80	0.995493
704	80			20	0.995493
706		80	20		0.995493
708		20	80		0.995493
709	80			20	0.995493
712	20			80	0.995493
713		20		80	0.995493
715		20		80	0.995493
1100	10			90	0.90298
1101		10	90		0.90298
1262	85		14		0.993533
1374	12			87	0.992554
1466		90		10	0.90298
1497		12		87	0.992554
1624		90	10		0.90298
2001		14		85	0.993533
2002	85		14		0.993533
2004	85	14			0.993533
2006	85		14		0.993533
2007	14			85	0.993533
2008		14		85	0.993533
2011	85			14	0.993533
2013	85		14		0.993533
2014	85	14			0.993533
2018	85			14	0.993533
2021		14		85	0.993533
2023	85	14			0.993533
2024	14	85			0.993533
2060	80		20		0.995493
2088	33			66	0.997452
2665	90	6		3	0.997952
2796	90			10	0.90298
2799	10			90	0.90298
2802	10	90			0.90298
2805		10		90	0.90298
2810	10	90			0.90298
2811	10			90	0.90298
2812	10			90	0.90298
2813		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain