SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27178

Length: 1441 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27178 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent RNA helicase, putative; K12815 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [EC:3.6.4.13]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	0.0	91%

Source	InterPros	Term	Type	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	91%
Blast2go	Helicase-associated domain	IPR007502	-	91%
Blast2go	Domain of unknown function DUF1605	IPR011709	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: your sequence is longer than subject: 392 - 348

Fln protein: MGMDALQVFPASRAAADQRAGRAGRTGPGTCYRLYTETAYQNEMLPNPVPEIQRTNLGNVVLLLKSLNVENLLDFDFMDPPPQDNILNSMYQLWVLGALDNVGRLTTLGRKMVEFPLDPPLAKMLLIGEQLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKMQKITLTTCDHDWDVIRKAICSAYFHNAARLKGIGEYANSRTGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVEPQWLAELGPMFFSIKDSHTSMLEQRKKQREEKTAMEQEMEDLRKKQAELEYEMKQREKEKRSRERQQVAMPGLRPTGTYLRPPKRLGL*

Protein Length: 393

Fln nts: TTGTAGCCACCAATATTGCTGAGACATCACTTACTGTTGATGGCATCTTATATGTGATTGATACTGGATATGGAAAGTTGAAAGTCTACAATCCAAGA_-_ATGGGTATGGATGCTCTTCAGGTTTTTCCTGCAAGCAGAGCTGCAGCAGATCAACGTGCTGGTAGAGCAGGTAGGACAGGTCCTGGGACATGCTATCGTTTGTACACTGAGACAGCATATCAGAATGAAATGCTGCCAAATCCGGTGCCTGAAATCCAACGTACCAACCTTGGAAATGTTGTTTTACTACTCAAGTCATTGAACGTTGAAAACCTTTTGGATTTTGATTTTATGGATCCTCCTCCACAAGACAATATTCTCAATTCAATGTATCAGCTTTGGGTACTTGGTGCACTTGATAATGTGGGCAGATTGACCACTCTTGGAAGGAAGATGGTCGAGTTTCCTCTTGATCCTCCCCTTGCAAAAATGCTATTAATTGGGGAACAACTTGGCTGTGTCAATGAAGTCTTGACAATTGTTTCTATGCTTTCTGTTCCTTCTGTTTTTTTCCGCCCTAAAGACAGGGCTGAAGAAAGTGATGCAGCAAGGGAAAAGTTTTTTGTTCCTGAGAGTGATCACCTGACACTTTTAAATGTGTACCAACAATGGAAATCTAATCAGTATCGGGGAGACTGGTGCAATGATCACTTTTTACAGGTAAAGGGATTGCGCAAAGCTCGCGAGGTGCGCTCTCAGCTTTTAGATATCCTCAAAATGCAAAAGATCACTCTGACAACTTGTGATCATGATTGGGATGTTATTAGGAAAGCAATTTGTTCTGCATACTTTCACAATGCAGCTAGGTTAAAAGGTATTGGTGAATATGCCAACAGCAGAACTGGAATGCCATGCCATCTGCATCCAAGCAGTGCACTATATGGACTGGGATACACTCCTGATTACGTTGTATATCATGAACTGGTTCTCACAACAAAGGAATATATGCAATGTGTTACTGCTGTTGAGCCTCAGTGGCTTGCTGAACTTGGCCCCATGTTCTTTTCTATCAAGGATTCACATACCTCAATGTTAGAACAAAGGAAAAAGCAAAGGGAAGAGAAGACTGCAATGGAACAGGAAATGGAAGATTTAAGGAAAAAGCAGGCTGAACTGGAATATGAAATGAAGCAGAGGGAGAAAGAAAAACGTTCTAGAGAGAGGCAACAAGTAGCTATGCCTGGTTTGCGTCCTACTGGCACGTATTTACGACCACCTAAACGACTGGGCCTGTAA___ACTTTCTGTACAATATTGTAAAGTAGAATAGCATCGAGAAAATTTATGTGTTTGGCTTGTTGGTTTTAAGAAAAGCAATTAGTTTAAAGTTGCATATCAGTAAACATAAAATGTAATCAAACTTGTCTACATTCATGATAAAGCAGAGATGAAAACTATTGAATATA

Fln Alignment:

sp_v1.1_unigene27178___MLPNPVPEIQRTXXXXXXXXXXXXXXXXXLDFDFMDPPPQDNILNSMYQLWVLGALDNVGRLTTLGRKMVEFPLDPPLAKMLLIGEQLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKMQKITLTTCDHDWDVIRKAICSAYFHNAARLKGIGEYANSRTGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVEPQWLAELGPMFFSIKDSHTSMLEQRKKQREEKTAMEQEMEDLRKKQAELEYEMXXXXXXXXXXXXXQVAMPGLRPTGTYLRPPKRLGL
D5ADJ5_______________MLPNPVPEIQRTNLGNVVLLLKSLNIENLLDFDFMDPPPQDNILNSMYQLWVLGALDNVGRLTALGRKMVEFPLDPPLAKMLLIGEQLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKMQKITLTTCGHDWDVIRKAICSAYFHNAARLKGIGEYANSRTGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVEPQWLAELGPMFFSIKDSHTSMLEQKKKQREEKTAMEQEMEDLRKKQAELEYEMKQRDKEKRARERQQVAMPGMRPTGTYLRPPKRLGL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
372		66		33	0.997452
374			33	66	0.997452
378		33	66		0.997452
380		33		66	0.997452
382			33	66	0.997452
385		33	66		0.997452
387	66	33			0.997452
388			33	66	0.997452
389	33	66			0.997452
391			33	66	0.997452
481	90		10		0.90298
604		16	83		0.994512
882		33		66	0.997452
883		33		66	0.997452
884		33		66	0.997452
886			66	33	0.997452
1081	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain