SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27159

Length: 2622 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27159
CGTGACCTTGGCTGTCACTCAGTGTTATATTACAGCTCTGTGACATTTTGAAGTGGAAGAAAATGGAGTTGGGAGCATAGATGGCCTCAAAGGAACCAAAGGATGTGCAGATGGAGGTGATGGTTCATGGAGTGGAGAATGAAGAGGGCGATGTTTTAAAAGGAAACAAGCTGCATGGTAACTCTCAGTGCAGCAAGTTCAAGCGGGTTGACTCCTTAGATTTGGAGTCGAGTACAGTTTCTGGAATGGCTACTCATGGCTCGAATCTGGTTACAGTGGCTTCCATTCTCCAGTTGGCCTTTCAGAGTATTGGAGTGGTTTATGGAGATATAGGAACTTCTCCCCTTTATGTGTTTGCTTCCACTTTTACAGATGGTATCCGTCATCCAGATGATGTTCTTGGTGCTCTGTCTCTCATAATATACTCGCTCACTCTTTTGCCACTGCTCAAATACGTTTTCATTGTACTGTGGGCTAATGATAACGGAGATGGTGGGACGTTTGCACTTTATTCCTTGATATGCCGTCATGCAAAAGTGAGCGTGGTTCCCAATCAACAAGCAGAGGATAGAGAGCTTTCATCATATAAGCTTGCAGTTCCCAGCAGGGAGCTCAAAAGAGCTTTGAAGATAAAAGAAGCTTTAGAAAAAAGTAATGCAGCTAAAACAATTTTGCTCATACTGGCCCTTCTTGGTACCTCCATGGTTATTGGAGATGGTGTGCTCACTCCTTGTATCTCAGTTTTATCAGCAGTTCAAGGGATACGGCAGGTTGACAAGTCAATCACCCAGGGGACAGTAGCTATGATATCAGTGGTGATAATAGTTATGCTCTTCTCTGTCCAGAGATTTGGAACCAGAAAAGTTGGTTACTCATTTGCTCCAGCGATCTTGATATGGTACTCCTCTATTGCCTTCATTGGCATCTACAACATCGTCAAATATGATACAACTGTGTTCCGAGCTTTCTATCCCAAATACATCTTTGAATACTTCAGAAGAGATTCACAGAGGGCTTGGATTTCACTTGGAGGAATAGTTCTCTGTGTAACAGGAACTGAAGCTATGTTCGCAGATCTAGGTCATTTTTCTGTTCGTTCAATTCAGATTGCCTTTACTGGAATAGTCTATCCTGCTTTAATCTGCGCATATGTGGGCCAAGCTGCATATCTCAAGAAGTTCCCTGAAAATGTGTCAGATACATTTTACAAATCTACTCCAAGAGCTATATATTGGCCAATGTTTGCAATTGCAATTGTTGCTTCTATTATAGCAAGCCAAGCCATGATCTCTGCAACTTTTGCTATCATAAAGCAGTCCATGTCCCTCGGATGCTTTCCACGCGTTACGGTGGTGCACACTTCATCAAAGCATGAAGGCCAAGTCTATATTCCAGAAATCAACTACATTCTCATGTTGGCATGCGTCATTGTCACCATTTCTTTCCAAGATACTACAAAGATCGGCAATGCCTATGGCATAGCTGTGGTTGGGGTTATGATTGTCACTTCATCCTTCCTCACACTGGTAATGCTTATGATATGGCAGACTCATTTATTGCTGATCGTTATCTTCGTCACTGTATTTGGAGCCATCGAATTCACATACTTCTCGGCAGTGCTGTACAAATTTCCCCAAGGTGGATACCTTCCAACAGCTTTTGCAGCATTATTGTTATTTGTAATGTATGTGTGGCATTATGTGCATGTAAAGAGATACGCCTATGAAGTAGAACACAAGGTGTCAACAGAATACATGTTAAGCCTGGGTTCAAGTCTGGATGTGACCAGAGTTCCGGGGATTGGGCTTCTATACACAGAACTAGCACAAGGAGTTCCAGCAATATTTGAACATTTCATGAGAAACCTTCCTGCCAGGCATTCTGTGCTTGTATTCGTCTGTGTGAAGTACCTCCCTGTTAATACAATTCCAGCTGAAGAACGATTTGTATTTCGCAGAATTGGTCCAAAAGAACACAAAATCTATAGATGTGTGGCTAGGTATGGTTATCGGGATACTAGGACTGGGAATGTTGAGTTTGAGAACCAGTTACTGGAATCCTTGAGAGAATTTATACAGTACGATTACCTATGCAGAAATGATATTATTAAGAAATCTCAGCATGAAGGAAAGAGTTCCAACTCTGGAGAAAGTACAGTCAATATTGACGCTGCTTCTGAAACTGAAGACATGAAGGCGTGCAGCATGGTGAGCGTAAAGGAGGAGCTGGAATTCTTAGAAAATGCAAAGGAATCGGGTGTGGTATATTTGCTGGGAGACAGTGAAGTTATTGCAAACAAAGATTCATCATTGTTCAAGAGATTTATAGTGAACTTTGCTTATAACATTTTGCGCAGGAACTGTAGAAAGGGGCAAGCTGCTTTAGAGATTCCACACAAAAATCTTTTGCAAGTCGGAATGACCTATTATATCTAAACTATATCGACTATGATATTTTTGTATATGTAGGTTTAATTCTTTTAACCCCGTCTGTCTGTAACGTGGCATTCGCTAAATTGTCAATCTGAGTAATGTATATTAATTGTGTTACCTCATATTTAAGGAGGTCCACAAATTTCTTCGAAATTCAAACTTCAAACTCTCAGGTTTCTTTCATAAAAAC

Ace file of the UniGene sp_v1.1_unigene27159

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter, putative; K03549 KUP system potassium uptake protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K+ potassium transporter	IPR003855	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 785 - 250

Fln protein: MASKEPKDVQMEVMVHGVENEEGDVLKGNKLHGNSQCSKFKRVDSLDLESSTVSGMATHGSNLVTVASILQLAFQSIGVVYGDIGTSPLYVFASTFTDGIRHPDDVLGALSLIIYSLTLLPLLKYVFIVLWANDNGDGGTFALYSLICRHAKVSVVPNQQAEDRELSSYKLAVPSRELKRALKIKEALEKSNAAKTILLILALLGTSMVIGDGVLTPCISVLSAVQGIRQVDKSITQGTVAMISVVIIVMLFSVQRFGTRKVGYSFAPAILIWYSSIAFIGIYNIVKYDTTVFRAFYPKYIFEYFRRDSQRAWISLGGIVLCVTGTEAMFADLGHFSVRSIQIAFTGIVYPALICAYVGQAAYLKKFPENVSDTFYKSTPRAIYWPMFAIAIVASIIASQAMISATFAIIKQSMSLGCFPRVTVVHTSSKHEGQVYIPEINYILMLACVIVTISFQDTTKIGNAYGIAVVGVMIVTSSFLTLVMLMIWQTHLLLIVIFVTVFGAIEFTYFSAVLYKFPQGGYLPTAFAALLLFVMYVWHYVHVKRYAYEVEHKVSTEYMLSLGSSLDVTRVPGIGLLYTELAQGVPAIFEHFMRNLPARHSVLVFVCVKYLPVNTIPAEERFVFRRIGPKEHKIYRCVARYGYRDTRTGNVEFENQLLESLREFIQYDYLCRNDIIKKSQHEGKSSNSGESTVNIDAASETEDMKACSMVSVKEELEFLENAKESGVVYLLGDSEVIANKDSSLFKRFIVNFAYNILRRNCRKGQAALEIPHKNLLQVGMTYYI*

Protein Length: 786

Fln nts: CGTGACCTTGGCTGTCACTCAGTGTTATATTACAGCTCTGTGACATTTTGAAGTGGAAGAAAATGGAGTTGGGAGCATAG_-_ATGGCCTCAAAGGAACCAAAGGATGTGCAGATGGAGGTGATGGTTCATGGAGTGGAGAATGAAGAGGGCGATGTTTTAAAAGGAAACAAGCTGCATGGTAACTCTCAGTGCAGCAAGTTCAAGCGGGTTGACTCCTTAGATTTGGAGTCGAGTACAGTTTCTGGAATGGCTACTCATGGCTCGAATCTGGTTACAGTGGCTTCCATTCTCCAGTTGGCCTTTCAGAGTATTGGAGTGGTTTATGGAGATATAGGAACTTCTCCCCTTTATGTGTTTGCTTCCACTTTTACAGATGGTATCCGTCATCCAGATGATGTTCTTGGTGCTCTGTCTCTCATAATATACTCGCTCACTCTTTTGCCACTGCTCAAATACGTTTTCATTGTACTGTGGGCTAATGATAACGGAGATGGTGGGACGTTTGCACTTTATTCCTTGATATGCCGTCATGCAAAAGTGAGCGTGGTTCCCAATCAACAAGCAGAGGATAGAGAGCTTTCATCATATAAGCTTGCAGTTCCCAGCAGGGAGCTCAAAAGAGCTTTGAAGATAAAAGAAGCTTTAGAAAAAAGTAATGCAGCTAAAACAATTTTGCTCATACTGGCCCTTCTTGGTACCTCCATGGTTATTGGAGATGGTGTGCTCACTCCTTGTATCTCAGTTTTATCAGCAGTTCAAGGGATACGGCAGGTTGACAAGTCAATCACCCAGGGGACAGTAGCTATGATATCAGTGGTGATAATAGTTATGCTCTTCTCTGTCCAGAGATTTGGAACCAGAAAAGTTGGTTACTCATTTGCTCCAGCGATCTTGATATGGTACTCCTCTATTGCCTTCATTGGCATCTACAACATCGTCAAATATGATACAACTGTGTTCCGAGCTTTCTATCCCAAATACATCTTTGAATACTTCAGAAGAGATTCACAGAGGGCTTGGATTTCACTTGGAGGAATAGTTCTCTGTGTAACAGGAACTGAAGCTATGTTCGCAGATCTAGGTCATTTTTCTGTTCGTTCAATTCAGATTGCCTTTACTGGAATAGTCTATCCTGCTTTAATCTGCGCATATGTGGGCCAAGCTGCATATCTCAAGAAGTTCCCTGAAAATGTGTCAGATACATTTTACAAATCTACTCCAAGAGCTATATATTGGCCAATGTTTGCAATTGCAATTGTTGCTTCTATTATAGCAAGCCAAGCCATGATCTCTGCAACTTTTGCTATCATAAAGCAGTCCATGTCCCTCGGATGCTTTCCACGCGTTACGGTGGTGCACACTTCATCAAAGCATGAAGGCCAAGTCTATATTCCAGAAATCAACTACATTCTCATGTTGGCATGCGTCATTGTCACCATTTCTTTCCAAGATACTACAAAGATCGGCAATGCCTATGGCATAGCTGTGGTTGGGGTTATGATTGTCACTTCATCCTTCCTCACACTGGTAATGCTTATGATATGGCAGACTCATTTATTGCTGATCGTTATCTTCGTCACTGTATTTGGAGCCATCGAATTCACATACTTCTCGGCAGTGCTGTACAAATTTCCCCAAGGTGGATACCTTCCAACAGCTTTTGCAGCATTATTGTTATTTGTAATGTATGTGTGGCATTATGTGCATGTAAAGAGATACGCCTATGAAGTAGAACACAAGGTGTCAACAGAATACATGTTAAGCCTGGGTTCAAGTCTGGATGTGACCAGAGTTCCGGGGATTGGGCTTCTATACACAGAACTAGCACAAGGAGTTCCAGCAATATTTGAACATTTCATGAGAAACCTTCCTGCCAGGCATTCTGTGCTTGTATTCGTCTGTGTGAAGTACCTCCCTGTTAATACAATTCCAGCTGAAGAACGATTTGTATTTCGCAGAATTGGTCCAAAAGAACACAAAATCTATAGATGTGTGGCTAGGTATGGTTATCGGGATACTAGGACTGGGAATGTTGAGTTTGAGAACCAGTTACTGGAATCCTTGAGAGAATTTATACAGTACGATTACCTATGCAGAAATGATATTATTAAGAAATCTCAGCATGAAGGAAAGAGTTCCAACTCTGGAGAAAGTACAGTCAATATTGACGCTGCTTCTGAAACTGAAGACATGAAGGCGTGCAGCATGGTGAGCGTAAAGGAGGAGCTGGAATTCTTAGAAAATGCAAAGGAATCGGGTGTGGTATATTTGCTGGGAGACAGTGAAGTTATTGCAAACAAAGATTCATCATTGTTCAAGAGATTTATAGTGAACTTTGCTTATAACATTTTGCGCAGGAACTGTAGAAAGGGGCAAGCTGCTTTAGAGATTCCACACAAAAATCTTTTGCAAGTCGGAATGACCTATTATATCTAA___ACTATATCGACTATGATATTTTTGTATATGTAGGTTTAATTCTTTTAACCCCGTCTGTCTGTAACGTGGCATTCGCTAAATTGTCAATCTGAGTAATGTATATTAATTGTGTTACCTCATATTTAAGGAGGTCCACAAATTTCTTCGAAATTCAAACTTCAAACTCTCAGGTTTCTTTCATAAAAAC

Fln Alignment:

sp_v1.1_unigene27159___LYTELAQGVPAIFEHFMRNLPARHSVLVFVCVKYLPVNTIPAEERFVFRRIGPKEHKIYRCVARYGYRDTRTGNVEFENQLLESLREFIQYD--YLCRNDIIKKSQHE---GKSSNSGESTVNIDAASETEDMKACSMV-------------------------------------SVKEELEFLENAKESGVVYLLGDSEVIANKDSSLFKRFIVNFAYNILRRNCRKGQAALEIPHKNLLQVGMTYYI
D5A8F8_______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVYLV

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
1242	60		40		1.0
1249		80	20		0.995493
1251	80		20		0.995493
1331		66		33	1.0
1352		42	57		1.0
1373	25		66		1.0
1388		66	33		1.0
1419		33		66	1.0
1430		62		37	1.0
1431	62			37	1.0
1460	57	42			1.0
1475	16	83			0.994512
1487		50		50	1.0
1508		60	40		1.0
1516		40	60		1.0
1556	57	42			1.0
1558	16	16		66	0.988813
1567	80		20		0.995493
1573	80		20		0.995493
1596	25	75			0.996473
1607		75		25	0.996473
1626		25	75		0.996473
1657	66			33	0.997452
1662	14			85	0.993533
1672			16	83	0.994512
1674	83		16		0.994512
1677	16		83		0.994512
1680	83		16		0.994512
1871			25	75	0.996473
1874		75	25		0.996473
1879	75			25	0.996473
1883	75			25	0.996473
1884			25	75	0.996473
1887	25			75	0.996473
1888		25	75		0.996473
1890	25		75		0.996473
1902		75		25	0.996473
1933		66		33	0.997452
1968		33		66	0.997452
2007		40		60	1.0
2028			22	77	0.999999
2052	25		75		1.0
2060	83		16		0.994512
2084	57			42	1.0
2097		57	42		1.0
2310	80			20	0.995493
2388	66		33		0.997452
2515	12	87			0.992554
2534	87		12		0.992554
2545	87		12		0.992554
2551			12	87	0.992554
2602	75			25	0.996473
2609			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain