SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27157

Length: 1059 nt

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27157

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative	-	-	6.0e-20	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	protein	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	59%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	59%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSK8

Fln msg: your sequence is shorter than subject: 247 - 282

Fln protein: MSSARRWWCHQCNMAIRQPRSTSRPVCPHCHGGFVEEVENVNHGAEEEDEAMAEVMQSLARFASRRPFSPFFFPPHGHVHDDEFLPMALRRMTRGNMGEFLLGPGLEQLSQCAVCKDEFELGKYAKRMPCNHMYHADCILPWLARHNSCPVCRYEMPTDDLEYDRLHARGRSGTSSSGRRSHFSHISTFRASMTTSQQAQAETSSGPASSGETVSSFFHDTQGNSSGSPRIDDDGDGIMQDTGGQL*

Protein Length: 248

Fln nts: CGTGACCTTGGCTGTCACTCAATTCTATAAATGCAAGGTAATATGTAGAGCTCAGCCCGGGTTCTGCTCGGCACTGGAGAATTGAGGTTCCAGGGGTTTCGCTAAATAGACAACGGGCTTTTAGCGAGGGTTTTTATTTGTTTTGGCCGGGGACTTTTCAGCG_-_ATGTCGTCTGCCAGGAGGTGGTGGTGCCATCAGTGCAACATGGCAATCAGGCAGCCCCGCAGCACAAGCAGGCCGGTCTGCCCTCACTGCCACGGTGGCTTTGTGGAAGAAGTCGAGAACGTAAATCATGGCGCGGAAGAGGAAGACGAAGCCATGGCCGAGGTGATGCAATCCCTTGCCAGGTTTGCTTCGCGCCGGCCTTTCAGCCCTTTCTTCTTCCCTCCCCACGGCCATGTGCACGACGATGAATTCCTCCCCATGGCGCTGAGGAGAATGACCAGAGGGAATATGGGGGAGTTTTTACTCGGCCCCGGGCTAGAGCAGTTGTCGCAGTGCGCGGTGTGTAAGGATGAGTTCGAACTGGGGAAATATGCAAAGCGGATGCCCTGTAATCATATGTATCACGCCGATTGCATTCTTCCATGGCTTGCGCGGCATAATTCTTGCCCGGTATGTCGATATGAGATGCCGACAGATGATCTGGAATATGATCGGTTGCACGCCCGGGGTCGAAGCGGCACCTCTTCTTCAGGTAGAAGGTCACACTTTTCCCATATCTCGACCTTCAGAGCATCCATGACAACATCCCAGCAAGCTCAAGCTGAAACGAGCTCAGGCCCAGCCAGTAGCGGAGAGACTGTGTCTAGCTTCTTCCATGACACTCAAGGAAACAGTTCTGGGAGTCCTAGGATAGATGATGATGGTGATGGAATTATGCAAGACACAGGGGGGCAACTGTAA___CGTTATCTATTGTCACATTGTACTGTGCAGCAAATTTTCAAAGTTGCAGAAGGTAAGGTTGCTTAGCTTATTTACACCAGCCTAGTAAAGGAAGTGGCAACTAGTTTGATATGTTCTTGCCCTATCGACAGTCATTTTGACAGGTGTTCAGTGTT

Fln Alignment:

sp_v1.1_unigene27157___MSSARRWWCHQCNMAIRQPRSTSRPVCPHCHGGFVEEVENVNHGXXXXXXXXXXVMQSLXXXXXXXXXXXXXXXXHGHVHDDEFLPMALRRMTRGNMGEFLLGPGLEQL------------------------------------SQCAVCKDEFELGKYAKRMPCNHMYHADCILPWLARHNSCPVCRYEMPTDDLEYDRLHAXXXXXXXXXXXXXHFSHISTFRASMTTSQQAQAETSSGPASSGETVSSFFHDTQGNSSGSPRIDDDGDGIMQDTGGQL
C0PSK8_______________MSSARSWWCHQCNAAIRQPRSANRPVCSHCHEGFVEEIENGNYGAEEEDEAMAQVMQSLSRFASRRPFSPFFFPPHGHVHDDEFLPVALRRMMQGNMGDCLLGPGLEQLLQELAESDPGRRGPPPASRASVDALENVKVSGKDAAAQCAVCKDEFEPGKYAKRMPCNHMYHADCILPWLAQHNSCPVCRYEMPTDDPEYDRMHVRGRSDTSSSGRRSRFSHIWPFRASMTTSQQAQAETSSGPANSGETVSSLFHESQGNSSGSPRIDDDGNIIMRNTRGQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain