SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27117

Length: 1247 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27117 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta 1,3-glycosyltransferase-like protein II n=6 Tax=Poaceae RepID=Q9LDB7_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	transferring glycosyl groups	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	78%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 31	IPR002659	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVS4

Fln msg: your sequence is shorter than subject: 175 - 340

Fln protein: VVTLAVTQIQETNDFLVLESHEEATEELPQKAKHFFSSVTEYWDAAFYVKIDDNIHLNLDKLTKVLESLRDKRRVYMGCMKSGQVISEEGQQWYEPNWWKFGDEKSYFRHAAAPLYVLSRDLAQYININSASLNTYAHEDISVGSWMMGLDAEYIDERRFCCSSMVEDEICSTG*

Protein Length: 176

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCAGGAAACAAATGATTTCCTAGTTCTTGAAAGTCACGAAGAAGCCACAGAGGAATTACCTCAAAAGGCCAAGCACTTTTTTAGTTCCGTAACAGAGTATTGGGATGCTGCTTTTTATGTCAAGATTGATGATAATATTCATCTAAACCTAGATAAGCTTACAAAAGTTCTTGAAAGTCTTCGAGACAAACGGCGGGTGTATATGGGATGTATGAAATCAGGGCAGGTGATAAGCGAAGAGGGTCAGCAATGGTATGAACCTAACTGGTGGAAATTTGGAGATGAAAAATCGTATTTCCGTCATGCAGCTGCTCCATTGTATGTTCTTTCGAGGGATCTTGCACAGTATATTAACATAAACAGTGCCTCCTTAAACACATATGCACACGAGGACATATCTGTGGGTTCATGGATGATGGGCCTGGATGCAGAATATATTGATGAGAGACGTTTCTGTTGTAGCAGCATGGTGGAAGATGAGATATGTTCAACTGGATGA___ATTAAAGTACTAACAACAGCTGAGTATATATGGACACTCAACAATGAAATGCCACTAAAATTTGATTCTTCATCAGATAGGTGGAGTTAAGGTTGTAGAGGAAGAAAAAAGGAAGCACGAACCTTTTGAAATAAGTTGATGGGCAGATTTCACTGCGATCCCATATGTTTCTATTGTGTGGCCACAGTTGATTTTAGATGATCAGAAGGCCCGTTCAAGGAAAGTTTGAGCTCCCAATGTCACATTCATTGGTAGTCTAAGCATACAATGTTGAAATTTTCAAACAATCTCCTTCCATCTATATTTGACATTAGAGAATCGAATTTTTTGAAAGGCTTTTGTAATCTAGCATATGGCATTTTATTGAATTTTGTAAAAGTTCTTCCTGAAGTTGGAAAAAGCCTGATGCTTGACCATATAGAGAAGATGTAAGAACATTGCGCTTCAAATAGAAAGCATTTCTTCCATATGGAGCATTGTATCGCAAATTGGAGATTCCTAAACATTCTTCATAGCTGTCTGAATTTCTGCAAATTAACAAAGCTGTGGCAGACATGCATAGCTTTGCGATTTAAATGTGTCATGATATTCAATTAATTTTTCCCCTGGAAAAGGTCAAGAGGACAAATTGAATTTCTTGGGAGCTGTAGATAAGAAACAGGTCCGAGTGCATTTATTTTGTTAAATATGGTAAAAAGAAACTTTACATGATTTAATGTTG

Fln Alignment:

sp_v1.1_unigene27117___QETNDFLVLESHEEATEELPQKAKHFFSSVTEYWDAAFYVKIDDNIHLNLDKLTKVLESLRDKRRVYMGCMKSGQVISEEGQQWYEPNWWKFGDEKSYFRHAAAPLYVLSRDLAQYININSASLNTYAHEDISVGSWMMGLDAEYIDERRFCCSSMVEDEICST
A9NVS4_______________RQTKDFFILENHVESSEELPKKPKLYFSNAADTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMKSGEVFSNPSHKWYEPESWKFGDGKSYFRHASGEMYVVSRAIAQFISINNAILQTYAHEDVSVGSWMLGLSVKHIDESQLCCSKSTQGGICAT

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
581		57		42	1.0
600	38		61		1.0
634			14	85	0.993533
636	85		14		0.993533
637		85		14	0.993533
638			14	85	0.993533
639	14	85			0.993533
644	14			85	0.993533
646			14	85	0.993533
647		85	14		0.993533
649		14	85		0.993533
651			14	71	0.984337
652		14	71	14	0.984337
653	71		28		1.0
655		28	71		1.0
657	71		28		1.0
658		16		83	0.994512
662	83		16		0.994512
663			16	83	0.994512
665		16		83	0.994512
666	16			83	0.994512
667	83	16			0.994512
669	16			83	0.994512
670		16	83		0.994512
690	12	87			0.992554
693			12	87	0.992554
694	87	12			0.992554
695		12		87	0.992554
697	12			87	0.992554
698	87		12		0.992554
699		87	12		0.992554
704	12	87			0.992554
705		12		87	0.992554
720	71	28			1.0
746		87	12		0.992554
748			12	87	0.992554
749	12	87			0.992554
751	75	12	12		0.975346
755	12			87	0.992554
757		80		20	0.995493
881			75	25	0.996473
882		75	25		0.996473
886	75			25	0.996473
887			25	75	0.996473
888	25	75			0.996473
890	25	75			0.996473
891			25	75	0.996473
893		25	75		0.996473
896	75		25		0.996473
898	75			25	0.996473
902	75		25		0.996473
906	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain