SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27080

Length: 2417 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27080
CGTGACCTTGGCTGTCACTCAAGGAAGCAGACTAAGAAATGAAAATGAGGCCGCCTCACAACAAAGGCAGGTTCTTACAAGTATGGTGGGCAACTTACAAAAGGAAAACCAGAAGCTCTCCAAACAGATCAATGTCATGTCAATTGTCCTTGGATTTGTCAATGGGCAAGATGCAAGTATGGCACGAAGAATGAGATACAGCAGGGCAACCAAGAAGCTGAAGCAATAATCCAGAGTCTGAAGGATAAGAAGAGGAACGCTGAAATTATGTTTGAAGCTGAAGAAAAACTAGTATCAGAACAGAATGCGAAAATAGAAGAACTGCAGAATGAAGTTCGTATTCTGAACGAGCAAAGCAGGGAACAAAATATTCAATTGCTTGAACGAAACGAAGAGACAGAAACCAAAGAGACAGAAGCCAAAGAAGCTGAGACCAAAGAAACTGTAACGAAAGGGGAAGAAGACACCAAGGAAGACACCAAGGAAGAAGTCAGGGGAACTGTGGAAGAGGTGAAAATTATAGAAACCACAACTGAGACGGACGTGAAGGTTGGGGAAGATGAGATAAAGAAGGTGGAAACAGAGGTTACGGTCACTGAAGTGATTGAGGTTCCAGCCCAAGGGGATGTTCCGAAGCATGAGGAAACTGTTACTCTTTCAGAAACTGTAACTGAAGCGGTGACTGTCTCAGCCCCTTCAACTGAGGCTCCTGCTGTTGATACTGAAACCGTAAAGGAAGAAGAAACAACATCTGCCCCTGCACCAGTTGATGCTGAAGCTCCAGTTGAGGTCACTGTTACCACGGTAACTGAGGAGGTTGTAATTCAACCTGTAGAAAACGTTTTCCTATGGGGAGTTCCTCTTCTTCACACCATGGGTGATGAATGTACTGACGTGATTCTGTTGAAGTTTCTCCGAGCAAGAGACTTCAAGGTTTCTGAAGCCTTTACTATGCTGAAAAACACAATTCTCTGGAGGAAACGTTTTGGAGCTGACAATATTTTGGAAGAGGACTTTGGTGCTGAGTGGAATGATGTGGCTTACATGCATGGTTATGACAAGGAAGGACATCCAGTATGTTACAATAATTACGGGGCGTTCCAGAATAAGGAGCTCTACCTGAAGACATTGAATGATGCTGGTGACCGCTTTTTGCGGTGGAGGATTCAGTTATTAGAAAAGGAGATACAGAAGCTGAGCTTCAACCCTGGAGGCATAAATTCAATGGTTCAAATTACTGATCTTAAGAACACGCCTGGTCCTGCAAAGTGGGGTTTGCGACAAGTTACCAAAAAGGCATTGACAATTCTTCAAGACAATTATCCAGAGTTTGTTGCTAGGAAGATATTTATCAATGTACCTTGGTGGTATGCGGTAATGAGCACAATGATATCTCCATTTGTAACACAACGAACTAAGAGCAAGTTTGTTGTTGCTCGTCCTGCCAGAGTGACAGAGACCTTGTTCAAGTACATTTCACCGGAGTATGTGCCAGTACAGTATGGAGGTTTGAGCAGAGAAAATGACGCAGAATTCTCTGCAGCAGATGGGGGAGTTTCAGAGCTGTTTATCAAACCAGGGGTGAAACAAATTGTTGAGATCCCTGCTACAGAGGTTGGATCCACACTGGTTTGGGATATAGCAGTTTTGGGTTGGGAAGTAACCTATGGAGAAGAGTTTGTACCTAATGCAGAAGGTGGTTATACTATTATCATACAGAAAGTGAAGAAAGTGGCTGCTGACGAAGAGCCGGTTCGAAACTCCTATAAAATTGGTGAGCCAGGGAAAGTACTGTTGACGATTGAGAACACATCATCAAAGAAGAAGAGAGCTCTTTACAGAACCAAAGTCAAGAGTGATCAGTAAGAAATACCATGAAGGGGTTTATGCTGCTTTTTTCTTATACCCTATGGGAAGAGATACCAGCCTGTGATTAAGATATCAAAATTTCATATTTGTTCATGTGCATACACATCTTATGATTATTGTCATCTCCTCCTGTTTGGAGTTTATTTTTCAAGCTATATTTGGTGGCTTGTGAGTTTTTGGATTTGTCATAATCCCACGCCAAAGTAGGAGGCATATGGGTCTCTGGTTGGCCAAAAAAAGTCTTTGGTGTTGGATCTATGTACACCTATAAAAAGATGTAAATGACAGCTATCAGGAGAGTCATGTGATCGCAAGCATTGGTCAATCAGTTTGGTCATGTAAATTGTCTGTACACTGTCTTGGTTTTCAACTTGTTATTAGCAGTCTGTCTAGGAGCGATTTCATCCTGTCGGGTCCTCATGTATTTTTATTATTCCCATTGATTACTGGTTGTGTGCTACATTATTCTATTGAAATTATATGCTTGAAAGTTCTGCTTAATACTTGTCACAATGATCTTCACAGGGTTCTTGCATAAATTGAAGAGC

Ace file of the UniGene sp_v1.1_unigene27080

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	8.0e-21	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	patellin-	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	76%
Blast2go	CRAL-TRIO domain	IPR001251	-	76%
Blast2go	Cellular retinaldehyde-binding/triple function, N-terminal	IPR008273	-	76%
Blast2go	GOLD	IPR009038	-	76%
Blast2go	CRAL/TRIO, N-terminal domain	IPR011074	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQX3

Fln msg: your sequence is shorter than subject: 533 - 592

Fln protein: MFEAEEKLVSEQNAKIEELQNEVRILNEQSREQNIQLLERNEETETKETEAKEAETKETVTKGEEDTKEDTKEEVRGTVEEVKIIETTTETDVKVGEDEIKKVETEVTVTEVIEVPAQGDVPKHEETVTLSETVTEAVTVSAPSTEAPAVDTETVKEEETTSAPAPVDAEAPVEVTVTTVTEEVVIQPVENVFLWGVPLLHTMGDECTDVILLKFLRARDFKVSEAFTMLKNTILWRKRFGADNILEEDFGAEWNDVAYMHGYDKEGHPVCYNNYGAFQNKELYLKTLNDAGDRFLRWRIQLLEKEIQKLSFNPGGINSMVQITDLKNTPGPAKWGLRQVTKKALTILQDNYPEFVARKIFINVPWWYAVMSTMISPFVTQRTKSKFVVARPARVTETLFKYISPEYVPVQYGGLSRENDAEFSAADGGVSELFIKPGVKQIVEIPATEVGSTLVWDIAVLGWEVTYGEEFVPNAEGGYTIIIQKVKKVAADEEPVRNSYKIGEPGKVLLTIENTSSKKKRALYRTKVKSDQ*

Protein Length: 534

Fln nts: CGTGACCTTGGCTGTCACTCAAGGAAGCAGACTAAGAAATGAAAATGAGGCCGCCTCACAACAAAGGCAGGTTCTTACAAGTATGGTGGGCAACTTACAAAAGGAAAACCAGAAGCTCTCCAAACAGATCAATGTCATGTCAATTGTCCTTGGATTTGTCAATGGGCAAGATGCAAGTATGGCACGAAGAATGAGATACAGCAGGGCAACCAAGAAGCTGAAGCAATAATCCAGAGTCTGAAGGATAAGAAGAGGAACGCTGAAATT_-_ATGTTTGAAGCTGAAGAAAAACTAGTATCAGAACAGAATGCGAAAATAGAAGAACTGCAGAATGAAGTTCGTATTCTGAACGAGCAAAGCAGGGAACAAAATATTCAATTGCTTGAACGAAACGAAGAGACAGAAACCAAAGAGACAGAAGCCAAAGAAGCTGAGACCAAAGAAACTGTAACGAAAGGGGAAGAAGACACCAAGGAAGACACCAAGGAAGAAGTCAGGGGAACTGTGGAAGAGGTGAAAATTATAGAAACCACAACTGAGACGGACGTGAAGGTTGGGGAAGATGAGATAAAGAAGGTGGAAACAGAGGTTACGGTCACTGAAGTGATTGAGGTTCCAGCCCAAGGGGATGTTCCGAAGCATGAGGAAACTGTTACTCTTTCAGAAACTGTAACTGAAGCGGTGACTGTCTCAGCCCCTTCAACTGAGGCTCCTGCTGTTGATACTGAAACCGTAAAGGAAGAAGAAACAACATCTGCCCCTGCACCAGTTGATGCTGAAGCTCCAGTTGAGGTCACTGTTACCACGGTAACTGAGGAGGTTGTAATTCAACCTGTAGAAAACGTTTTCCTATGGGGAGTTCCTCTTCTTCACACCATGGGTGATGAATGTACTGACGTGATTCTGTTGAAGTTTCTCCGAGCAAGAGACTTCAAGGTTTCTGAAGCCTTTACTATGCTGAAAAACACAATTCTCTGGAGGAAACGTTTTGGAGCTGACAATATTTTGGAAGAGGACTTTGGTGCTGAGTGGAATGATGTGGCTTACATGCATGGTTATGACAAGGAAGGACATCCAGTATGTTACAATAATTACGGGGCGTTCCAGAATAAGGAGCTCTACCTGAAGACATTGAATGATGCTGGTGACCGCTTTTTGCGGTGGAGGATTCAGTTATTAGAAAAGGAGATACAGAAGCTGAGCTTCAACCCTGGAGGCATAAATTCAATGGTTCAAATTACTGATCTTAAGAACACGCCTGGTCCTGCAAAGTGGGGTTTGCGACAAGTTACCAAAAAGGCATTGACAATTCTTCAAGACAATTATCCAGAGTTTGTTGCTAGGAAGATATTTATCAATGTACCTTGGTGGTATGCGGTAATGAGCACAATGATATCTCCATTTGTAACACAACGAACTAAGAGCAAGTTTGTTGTTGCTCGTCCTGCCAGAGTGACAGAGACCTTGTTCAAGTACATTTCACCGGAGTATGTGCCAGTACAGTATGGAGGTTTGAGCAGAGAAAATGACGCAGAATTCTCTGCAGCAGATGGGGGAGTTTCAGAGCTGTTTATCAAACCAGGGGTGAAACAAATTGTTGAGATCCCTGCTACAGAGGTTGGATCCACACTGGTTTGGGATATAGCAGTTTTGGGTTGGGAAGTAACCTATGGAGAAGAGTTTGTACCTAATGCAGAAGGTGGTTATACTATTATCATACAGAAAGTGAAGAAAGTGGCTGCTGACGAAGAGCCGGTTCGAAACTCCTATAAAATTGGTGAGCCAGGGAAAGTACTGTTGACGATTGAGAACACATCATCAAAGAAGAAGAGAGCTCTTTACAGAACCAAAGTCAAGAGTGATCAGTAA___GAAATACCATGAAGGGGTTTATGCTGCTTTTTTCTTATACCCTATGGGAAGAGATACCAGCCTGTGATTAAGATATCAAAATTTCATATTTGTTCATGTGCATACACATCTTATGATTATTGTCATCTCCTCCTGTTTGGAGTTTATTTTTCAAGCTATATTTGGTGGCTTGTGAGTTTTTGGATTTGTCATAATCCCACGCCAAAGTAGGAGGCATATGGGTCTCTGGTTGGCCAAAAAAAGTCTTTGGTGTTGGATCTATGTACACCTATAAAAAGATGTAAATGACAGCTATCAGGAGAGTCATGTGATCGCAAGCATTGGTCAATCAGTTTGGTCATGTAAATTGTCTGTACACTGTCTTGGTTTTCAACTTGTTATTAGCAGTCTGTCTAGGAGCGATTTCATCCTGTCGGGTCCTCATGTATTTTTATTATTCCCATTGATTACTGGTTGTGTGCTACATTATTCTATTGAAATTATATGCTTGAAAGTTCTGCTTAATACTTGTCACAATGATCTTCACAGGGTTCTTGCATAAATTGAAGAGC

Fln Alignment:

sp_v1.1_unigene27080___NVFLWGVPLLHTMGDECTDVILLKFLRARDFKVSEAFTMLKNTILWRKRFGADNILEEDFGAEWNDVAYMHGYDKEGHPVCYNNYGAFQNKELYLKTLN--DAGDRFLRWRIQLLEKEIQKLSFNPGGINSMVQITDLKNTPGPAKWGLRQVTKKALTILQDNYPEFVARKIFINVPWWYAVMSTMISPFVTQRTKSKFVVARPARVTETLFKYISPEYVPVQYGGLSRENDAEFSAADGGVSELFIKPGVKQIVEIPATEVGSTLVWDIAVLGWEVTYGEEFVPNAEGGYTIIIQKVKKVAADEEPVRNSYKIGEPGKVLLTIENTSSKKKRALYRTKVK
B8LQX3_______________DVYLWGVPLLHTKGDERTDVILLKFLRARDFKVQEAFEMLKNTVLWRKSFKTDSILEEDFGNDLDGVAYMNGYDKEGHPVCYNVYGVFQDKELYQKTFGTEEKRQRFLRWRVQLLEKGIEQLSFSPGGVNSMVQITDLKNSPGPGKKELRQATKQALDLLQDNYPEFVARKIFINVPWWYLALSTMISPFITQRTKSKFVIARASRVTETLFKYISPEYVPVQYGGLNRENDQEFSGADGGVTELIIKAGTKQIIDIPATEVGTSLVWDLTVVGWEVSYKEEFIPSAEGCYTVIIQKEKKMAAQEEAVRNSFKIGEVGKVVLTIDNLSSRKKKLIYRSKVK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
2369	13		81		1.0
2370	9	86			0.999642
2371	18	4		77	1.0
2381	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain