SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27075

Length: 1602 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27075

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine protease, putative n=1 Tax=Ricinus communis RepID=B9RHA4_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cysteine proteinase	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase, cysteine peptidase active site	IPR000169	-	84%
Blast2go	Peptidase C1A, papain C-terminal	IPR000668	-	84%
Blast2go	Peptidase C1A, papain	IPR013128	-	84%
Blast2go	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKS7

Fln msg:

Fln protein: MGSSTLLLLVLCISSVICLSLAIRPDDDLIRQVTDEVDSDPQILDARSALFNAEAHFRRFIRRYGKKYSGPEEHEHRFGVFKSNLLRALEHQKLDPQASHGVTEFSDLTQEEFRRQYLGLRAPPIRDAHDAPILPTNDLPEEFDWREKGAVTEVKNQGSCGSCWAFSTTGALEGANFLKTGKLVSLSEQQLVDCDHECDPSDARSCDSGCNGGLMTSAYQYALKAGGLEREEDYPYTGKDGTCSFNKNKIVAHVSNFSVVSIDEDQIAANLVKNGPLSVGINAAFMQTYVGGVSCPYICSKRMLDHGVLLVGYGSAGFAPIRMKDKPYWIIKNSWGPNWGENGFYKLCRGHNVCGINNMVSTVAAI*

Protein Length: 368

Fln nts: CGTGACCTTGGCTGTCACTCAACTTTTAACCCGAGCCCTAACCTCCGATTAACGACTCCCAATCTCTTCCATAAATCCGGTCCAAACATTTTCATTCCCATCCATTATCTGTAATTGCTCAACA_-_ATGGGATCCTCCACGCTGCTGCTTTTGGTTCTCTGTATTTCCTCTGTAATTTGCCTTTCCTTGGCCATAAGGCCTGACGATGACCTTATTCGTCAAGTGACGGACGAAGTAGATTCAGATCCACAGATCCTCGATGCTCGGAGCGCCCTGTTCAACGCTGAAGCGCACTTCAGGCGCTTCATCAGGCGCTACGGTAAGAAGTACTCGGGGCCAGAAGAGCACGAGCACCGCTTCGGTGTCTTCAAGAGCAATTTACTAAGAGCCTTGGAGCACCAGAAGCTCGACCCCCAGGCCTCCCATGGCGTCACCGAATTCTCTGATTTGACACAAGAGGAGTTCCGACGACAGTATCTAGGGCTCAGGGCACCACCGATCCGAGACGCCCACGATGCTCCAATTTTGCCCACAAACGATCTGCCGGAGGAGTTCGATTGGAGAGAGAAGGGAGCCGTGACCGAGGTTAAGAATCAGGGATCTTGCGGTTCCTGCTGGGCTTTCAGCACAACCGGGGCGCTAGAGGGCGCGAATTTCCTGAAGACGGGGAAGCTGGTGAGCCTGAGCGAGCAACAATTGGTGGACTGTGATCACGAGTGCGATCCTTCGGACGCAAGATCATGTGATTCTGGTTGCAATGGTGGGCTAATGACAAGTGCTTATCAATATGCTCTGAAAGCTGGTGGATTGGAGAGGGAAGAGGACTACCCATACACTGGAAAAGACGGAACTTGCAGCTTCAACAAGAACAAAATTGTCGCACATGTTTCGAATTTCAGCGTTGTTTCTATTGATGAAGATCAAATTGCTGCAAATCTGGTGAAGAATGGACCTCTATCAGTGGGAATCAATGCCGCATTTATGCAGACATACGTAGGAGGTGTATCTTGCCCATACATTTGCAGCAAGCGCATGTTGGATCATGGTGTGCTCCTGGTAGGATATGGTTCTGCAGGCTTTGCTCCCATTAGAATGAAGGACAAACCCTACTGGATCATAAAGAACTCATGGGGACCTAACTGGGGAGAAAATGGATTTTACAAACTTTGCAGGGGACATAACGTTTGCGGAATCAACAACATGGTTTCCACGGTTGCAGCTATATGA___GCATTCAAATTAGATCAGTTTCTTGTATATAGTATATACCTCTTTATTTAGACTTTGGTTGAAACTATGTTGTTGAATGCACATACATATTCAATATACATTGAATATACTTTATTCAAGTATACTGAAGGATTTAAGTATTTAAAGGATTTACAAATGAAGCACTCTGATGAATACTCTTAAGAATATTAATATGGTTTGTGGTTCAAAAAACTGCCAGTCAAGGACTTCAAACTCTGGTTTCCAAGTTTGTTTGAGGTGATGTAAATATGGGAGTTTATGATTTGTATAATATGGAAAATTGTCGAATCACATCAGAAGTCTAATAGAACATGTTAACTAGAAATTAAATCACTGCTATACATGTTTGTTTGAGG

Fln Alignment:

sp_v1.1_unigene27075___AIRPDDDLIRQVTDEVDSDPQILDARSALFNAEAHFRRFIRRYGKKYSGPEEHEHRFGVFKSNLLRALEHQKLDPQASHGVTEFSDLTQEEFRRQYLGLRAPPIRDAHDAPILPTNDLPEEFDWREKGAVTEVKNQGSCGSCWAFSTTGALEGANFLKTGKLVSLSEQQLVDCDHECDPSDARSCDSGCNGGLMTSAYQYALKAGGLEREEDYPYTGKDGTCSFNKNKIVAHVSNFSVVSIDEDQIAANLVKNGPLSVGINAAFMQTYVGGVSCPYICSKRMLDHGVLLVGYGSAGFAPIRMKDKPYWIIKNSWGPNWGENGFYKLCRGHNVCGINNMVSTVAAI
A9NKS7_______________ATRPDDDLIRQVTDEVVSDPQILDARSALFNAEVHFRHFIRRYGKKYSGPEEHEHRFGVFKSNLLRALEHQKLDPRASHGVTKFSDLTQEEFRHQYLGLRAPPLRDAHDAPILPTNDLPEDFDWREKGAVTEVKNQGSCGSCWAFSTTGALEGANFLKTGELVSLSEQQLVDCDHECDPSDARSCDSGCNGGLMTSAYQYALKSGGLEKEEDYPYTGKDGTCSFNKNKIVAHVSNFSVVSIDEGQIAANLVKNGPLSVGINAAFMQTYVGGVSCPYVCSKRNLDHGVLLVGYGAAAFAPIRMKDKPYWVIKNSWGPNWGENGYYKLCRGHNVCGINNMVSTVAAI

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
773	75		25		0.996473
1084	0	97			0.999861
1431		4		95	0.999989
1432		96		3	0.987242
1535	2	8		89	1.0
1536	2	92			0.98868
1538	7	89	3		0.998606
1556	90		9		0.999842
1572	22		11	66	0.999999
1576	80		20		0.995493
1577	25			75	0.996473
1578	25	75			0.996473
1580	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain