SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27068

Length: 1476 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene27068 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L13, putative n=1 Tax=Ricinus communis RepID=B9T1K1_RICCO	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	ribosomal protein l13	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L13	IPR005822	-	88%
Blast2go	Ribosomal protein L13, bacterial-type	IPR005823	-	88%
Blast2go	Ribosomal protein L13, conserved site	IPR023563	-	88%
Blast2go	Ribosomal protein L13 domain	IPR023564	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT8

Fln msg: Overlapping hits, possible frame ERROR between 471 and 203,

Fln protein: MLAMASPCTTASPSCTRMHSSLHIFRPPTCSLSRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVASTIAIHIRGKNLATFTPSVDMGAYVIVVNAEKIAVSGNKRTQKLYRRHSGRPGGLKVETFDHLQKRIPERIVEHAVRGMLPKGRLGRRLFTHLKVFKGPDHPHEAQKPESLPIADKRIMIKK*

Protein Length: 252

Fln nts: CGTCGTGACCTTGGCAGTGGCAATATGGCCAGTTTTTCATAAAGAAAGAGCAGATGAGGTAAGGCAAGGCAAAGCTAATAGGGCGTAAGAAGCAAA_-_ATGTTGGCCATGGCGAGCCCCTGTACTACTGCTTCTCCTTCCTGCACAAGGATGCATTCATCTCTGCATATATTCAGACCACCCACCTGTTCTTTATCTCGTATCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGGCATCAACCATAGCTATACACATTCGTGGAAAGAATCTAGCAACCTTTACTCCGAGTGTGGACATGGGAGCATATGTTATTGTGGTTAACGCAGAAAAAATAGCTGTTTCAGGAAATAAGAGGACACAGAAGCTGTATAGGAGGCACTCGGGCAGACCGGGGGGGTTAAAGGTGGAAACCTTTGATCATCTCCAGAAGAGAATTCCAGAGCGTATTGTTGAGCATGCAGTCAGGGGCATGCTTCCTAAAGGACGTCTTGGCAGAAGGCTTTTCACACATTTAAAGGTTTTCAAAGGGCCAGATCACCCACATGAGGCTCAAAAACCTGAGTCACTGCCGATTGCGGACAAGAGAATAATGATAAAGAAGTAA___GCGGTTGAGTTTTACGATTTCATCCTCTACAGGTATAGGCTTGTTGCACCTTAAGCCACTGTGAACAATTTTTAAAAGCTGATTTTCCAGGTCTCAAACTCCGCAACATGTCCTGATCAGAAGACTTTATGTTCATTTATTCGTTTCTTTTTCCCCTTGATGTTGCTAACATAGAGATGATGCGTCTCTTTAGCTCTACGGTATTGTAACATCAAATGTTTTGATAGTTGAAAACAACTGTCCATGTGTTTTGGAAGTGCTGAATGTTCACTCTGTCCAAATTATCATGAGTGGTAGTGCATACTGTCGACATATCCACTAATGTGATCTGCAATCTAAATCAAAAGAGTCTAAAACACTACGCAAGATTTAGGCCCACAATTGAACTTCGAAGGACTAATATGCATTCTTCTTTAAGTATTGAACAATAAATTTATTGTTTCTAAATTGGTCACTCAAGATAAATTAGATCTTCGGCGTTTTCAAAGTGACTATCCGATCTTTTAATAGATTTCATAGGGTTTTATCTTTTTGTCACCTGGATAGCTTTTAGCCTTCCACTGCATTTCTGTTTTTAAAACACTTCTAGAAAAGTGGATATTAACATTCTAATACCCTCACGGTAATGA

Fln Alignment:

sp_v1.1_unigene27068___MLAMASPCTTASPSCTRMHSSLHIFRPPTCSLSRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVASTIAIHIRGKNLATFTPSVDMGAYVIVVNAEKIAVSGNKRTQKLYRRHSGRPGGLKVETFDHLQKRIPERIVEHAVRGMLPKGRLGRRLFTHLKVFKGPDHPHEAQKPESLPIADKRIMIKK
A9NUT8_______________MLAMASPCTAVTPSYTRMNSSLHMFRPPNCSLSRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLASTIAIHIRGKNLATFTPSVDMGAYVIVVNAEKVAVSGNKRTTKLYRRHSGRPGGLKVETFDHLQKRIPERIVEHAVRGMLPKGRLGRRLFTHLKVFKGPDHPHEAQKPEPLPIMDKRILIKK

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
1327			90	9	0.999872
1328		90	9		0.999872
1331	45	55			1.0
1333	10			90	0.999898
1336		10		90	0.999898
1337		10	90		0.999898
1338	10	90			0.999898
1342	90			10	0.999898
1344		10	90		0.999898
1386	11	88			0.999952
1387			11	88	0.999952
1389		88	11		0.999952
1390	11			88	0.999952
1391		11		88	0.999952
1397	11	88			0.999952
1398	11			88	0.999952
1399	88		11		0.999952
1400			11	88	0.999952
1402	88	11			0.999952
1403	11		88		0.999952
1405			11	88	0.999952
1406	11			88	0.999952
1407		11		88	0.999952
1408		11	88		0.999952
1411		14		85	0.999981
1424	90	10			0.90298
1425		10		90	0.90298
1427		10		90	0.90298
1428	10		90		0.90298
1429		90		10	0.90298
1430		11		88	0.923564
1432		12		87	0.992554
1433		12		87	0.992554
1436		14		85	0.993533
1437		14		85	0.993533
1438		14		85	0.993533
1442	85			14	0.993533
1444	85	14			0.993533
1445	85			14	0.993533
1449	14		71		0.984337
1452		83	16		0.994512
1453	83			16	0.994512
1455	60		20	20	0.99255
1456	25		25	50	0.995533
1457	25			75	0.996473
1458	25	25	50		0.995533
1459		50	25	25	0.995533
1460		75	25		0.996473
1461	66	33			0.997452
1462	33	66			0.997452
1463	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain