SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27061

Length: 2425 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene27061
GGAACTGACAAGCTGGGTTGTTTATTCAGATGAGGAACGCAAATTCAACAAGGATATAACTGTTGCACTTATTCGTTCTGAACTAATTAACCTTACAGAATATAACATGCATCTTGCTAAACTTGTGGATGGAGGACGTAATGCTGCGGCAACCGAATTTGCTATCTTTCTTGTTCAAACCTGTGTTATTCAAGAACCGGGGGTTAGTGCATCTGAGCTCTACAATCTTATTGAAGCTCTCGGAAAGGTGGCACAAAGGCCAGGCTCTCCTGAGTCCTTGCAACAATTAATTGAAGATGTAAGGAATGTTTCTTCAAATGCAGCTGGTCAAAATGCATCTTCAATTGGGAAAGAGGAGAAGGCTAGACAATCTAGAGATAAAAAGGCTATTCCTGGTCGACTTGGGGCAAATAGGGACGACAACAAACTAACGAGCCGAGATGGTGGATCAGCTGATCCTGCTGGTTTTCGTGAACAGGTTGGAAGTCTTTTTGAAGACTGGGCTCGTATTTGTGATTCTCCTGGAGTGAATGATAAAGCATATGCAGTTTACATATCACAGTTACAGCAATCTGGGATGTTAAAAGGAGATGATATTTCTGACCGGTTCTTCCGTGTCTTAACGGAACTGTCTGTCCAACACTGTTTAGCCTCTGAAATCTCAGTGCCGGTTTCTCTTCCACTCCCATCCCAACAAATGACACAAGGCCTTTCCTTTACATTAATTGATATGTATTCGAAACTCGTGGTTTTGTTGGTTAAGTATTGTGCAGTGGACCCAGGAATGAGTAAAGTCAATCTTCTAAACAAGGTGCTTGCAGTAACTGTGCGTGTCATTCAAAGGGATGCAGAAGACAAAAAAAGTGCATTCCATCCTAGGCCTTATTTCAGGCTATTTGTGAACTGGCTCATGGATTTTAACTCCCCTGATCCTGCTCTTGATGCCAGCAATTTTCAAGTACTCACTGCATTTGCAAATGCTTTCCATTCTTTACAACCTTTGAGAGTACCTGGTTGGAGTTTTGCTTGGCTGGAATTGATAAGTCATCGCAGTTTCATGCCCAAGTTACTTCTGAGTAACAACCAAAAGGGTTGGCCACTGGTTCAGCGTCTTCTTGTGGATTTATTCAAGTTTATGGAGCCTTACTTGAGAAATGCTGAACTCAGTGATCCGGTTCGGTTGTTATACAAAGGCACACTTCGGGTGTTGTTGGTTCTACTTCATGATTTTCCAGAGTTTCTATGTGATTACCATTTCAGCTTTTGTGATGTTATTCCTCCTAGCTGCATACAGATGCGAAATCTCATCCTCAGTGCCTTTCCACGGAACATGAGGCTCCCAGACCCATTCACCCCCAACTTAAAAGTTGACCTTCTTCCTGAAATCAGCCAGTCACCAAGAATATTATCCGAGGTAGACGCAGCGTTGAAGACTAAACAGCTAAAATCAGAGGTTGATGAATATTTGAAGACACGACAGCCAATGTCTATATTTATAATTGATTTGAAGCAGAGGGTATTGCTTCCTCCACATGAATCTGTATCTGCTGGAACCCGATATAATGTTCCTTTAATTAATTCTCTGGTGCTTTATGTAGGAATGCAGGCAATACAACAGTTGCAGAGCAAAACCACACCTCAACAGCTTGCAGTCCCAACAGCACCTATAACTCATAGTGCCCCGATGGACATATTCCAGAGACTGATATTAGATCTGGACACAGAAGGCCGATACTTGTTTCTTAACGCGGTTGCCAATCAATTGCGTTATCCAAATAACCATACCCATTACTTTTCGTGTGTGTTGCTGTATCTTTTTGCAGAAGCAAATCAGGAGATTATCCAAGAACAGATAACAAGAGTACTGTTAGAACGCTTAATAGTAAATAGACCTCATCCATGGGGACTACTCATTACTTTCATTGAACTTATAAAGAATCCACGCTATAATTTCTGGAATCGTGGATTCACGCACTGTGCTCCTGAGATAGAGAAATTATTTGAGTCAGTTGCTCGCTCTTGTATGGGACAATCAATGAAGCCTGTGGAAGATGACATTGCCTCTAGTATATCGACAGAAAGCAACCATTGATAATCACAATGCTTTGTATCGTATAACTGTGCAGTTTTTGCTATCCAATTTCTCTGATTGGCAACGTGAATCATTTCTTCTTATATTCTGCCAAGTATTATTTGTGATTTATGAGTTCTGTATTATTACAGCACTGAATCTGATGGCAGAAAAGGAGCTGAAAACAAATAGGTGATAATTTTGATGTATAAATCCTTTGGGTAGCATATTTAAATCTGAATGAAAGTGATGTATATGTTCCTTTTCATCTGGTTGTTTGATACAAGTTTATGAATTCCAGGTTCTGATTAAAATTTAGAATTTGTTGAAATGCATTAATGTATTATTTTAGAT

Ace file of the UniGene sp_v1.1_unigene27061 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ccr4-not transcription complex, putative; K12604 CCR4-NOT transcription complex subunit 1	-	-	67%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	72%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	CCR4-Not complex component, Not1, C-terminal	IPR007196	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SJI9

Fln msg: your sequence is shorter than subject: 697 - 2335

Fln protein: ELTSWVVYSDEERKFNKDITVALIRSELINLTEYNMHLAKLVDGGRNAAATEFAIFLVQTCVIQEPGVSASELYNLIEALGKVAQRPGSPESLQQLIEDVRNVSSNAAGQNASSIGKEEKARQSRDKKAIPGRLGANRDDNKLTSRDGGSADPAGFREQVGSLFEDWARICDSPGVNDKAYAVYISQLQQSGMLKGDDISDRFFRVLTELSVQHCLASEISVPVSLPLPSQQMTQGLSFTLIDMYSKLVVLLVKYCAVDPGMSKVNLLNKVLAVTVRVIQRDAEDKKSAFHPRPYFRLFVNWLMDFNSPDPALDASNFQVLTAFANAFHSLQPLRVPGWSFAWLELISHRSFMPKLLLSNNQKGWPLVQRLLVDLFKFMEPYLRNAELSDPVRLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLPEISQSPRILSEVDAALKTKQLKSEVDEYLKTRQPMSIFIIDLKQRVLLPPHESVSAGTRYNVPLINSLVLYVGMQAIQQLQSKTTPQQLAVPTAPITHSAPMDIFQRLILDLDTEGRYLFLNAVANQLRYPNNHTHYFSCVLLYLFAEANQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRGFTHCAPEIEKLFESVARSCMGQSMKPVEDDIASSISTESNH*

Protein Length: 698

Fln nts: GGAACTGACAAGCTGGGTTGTTTATTCAGATGAGGAACGCAAATTCAACAAGGATATAACTGTTGCACTTATTCGTTCTGAACTAATTAACCTTACAGAATATAACATGCATCTTGCTAAACTTGTGGATGGAGGACGTAATGCTGCGGCAACCGAATTTGCTATCTTTCTTGTTCAAACCTGTGTTATTCAAGAACCGGGGGTTAGTGCATCTGAGCTCTACAATCTTATTGAAGCTCTCGGAAAGGTGGCACAAAGGCCAGGCTCTCCTGAGTCCTTGCAACAATTAATTGAAGATGTAAGGAATGTTTCTTCAAATGCAGCTGGTCAAAATGCATCTTCAATTGGGAAAGAGGAGAAGGCTAGACAATCTAGAGATAAAAAGGCTATTCCTGGTCGACTTGGGGCAAATAGGGACGACAACAAACTAACGAGCCGAGATGGTGGATCAGCTGATCCTGCTGGTTTTCGTGAACAGGTTGGAAGTCTTTTTGAAGACTGGGCTCGTATTTGTGATTCTCCTGGAGTGAATGATAAAGCATATGCAGTTTACATATCACAGTTACAGCAATCTGGGATGTTAAAAGGAGATGATATTTCTGACCGGTTCTTCCGTGTCTTAACGGAACTGTCTGTCCAACACTGTTTAGCCTCTGAAATCTCAGTGCCGGTTTCTCTTCCACTCCCATCCCAACAAATGACACAAGGCCTTTCCTTTACATTAATTGATATGTATTCGAAACTCGTGGTTTTGTTGGTTAAGTATTGTGCAGTGGACCCAGGAATGAGTAAAGTCAATCTTCTAAACAAGGTGCTTGCAGTAACTGTGCGTGTCATTCAAAGGGATGCAGAAGACAAAAAAAGTGCATTCCATCCTAGGCCTTATTTCAGGCTATTTGTGAACTGGCTCATGGATTTTAACTCCCCTGATCCTGCTCTTGATGCCAGCAATTTTCAAGTACTCACTGCATTTGCAAATGCTTTCCATTCTTTACAACCTTTGAGAGTACCTGGTTGGAGTTTTGCTTGGCTGGAATTGATAAGTCATCGCAGTTTCATGCCCAAGTTACTTCTGAGTAACAACCAAAAGGGTTGGCCACTGGTTCAGCGTCTTCTTGTGGATTTATTCAAGTTTATGGAGCCTTACTTGAGAAATGCTGAACTCAGTGATCCGGTTCGGTTGTTATACAAAGGCACACTTCGGGTGTTGTTGGTTCTACTTCATGATTTTCCAGAGTTTCTATGTGATTACCATTTCAGCTTTTGTGATGTTATTCCTCCTAGCTGCATACAGATGCGAAATCTCATCCTCAGTGCCTTTCCACGGAACATGAGGCTCCCAGACCCATTCACCCCCAACTTAAAAGTTGACCTTCTTCCTGAAATCAGCCAGTCACCAAGAATATTATCCGAGGTAGACGCAGCGTTGAAGACTAAACAGCTAAAATCAGAGGTTGATGAATATTTGAAGACACGACAGCCAATGTCTATATTTATAATTGATTTGAAGCAGAGGGTATTGCTTCCTCCACATGAATCTGTATCTGCTGGAACCCGATATAATGTTCCTTTAATTAATTCTCTGGTGCTTTATGTAGGAATGCAGGCAATACAACAGTTGCAGAGCAAAACCACACCTCAACAGCTTGCAGTCCCAACAGCACCTATAACTCATAGTGCCCCGATGGACATATTCCAGAGACTGATATTAGATCTGGACACAGAAGGCCGATACTTGTTTCTTAACGCGGTTGCCAATCAATTGCGTTATCCAAATAACCATACCCATTACTTTTCGTGTGTGTTGCTGTATCTTTTTGCAGAAGCAAATCAGGAGATTATCCAAGAACAGATAACAAGAGTACTGTTAGAACGCTTAATAGTAAATAGACCTCATCCATGGGGACTACTCATTACTTTCATTGAACTTATAAAGAATCCACGCTATAATTTCTGGAATCGTGGATTCACGCACTGTGCTCCTGAGATAGAGAAATTATTTGAGTCAGTTGCTCGCTCTTGTATGGGACAATCAATGAAGCCTGTGGAAGATGACATTGCCTCTAGTATATCGACAGAAAGCAACCATTGA___TAATCACAATGCTTTGTATCGTATAACTGTGCAGTTTTTGCTATCCAATTTCTCTGATTGGCAACGTGAATCATTTCTTCTTATATTCTGCCAAGTATTATTTGTGATTTATGAGTTCTGTATTATTACAGCACTGAATCTGATGGCAGAAAAGGAGCTGAAAACAAATAGGTGATAATTTTGATGTATAAATCCTTTGGGTAGCATATTTAAATCTGAATGAAAGTGATGTATATGTTCCTTTTCATCTGGTTGTTTGATACAAGTTTATGAATTCCAGGTTCTGATTAAAATTTAGAATTTGTTGAAATGCATTAATGTATTATTTTAGAT

Fln Alignment:

sp_v1.1_unigene27061___ELTSWVVYSDEERKFNKDITVALIRSELINLTEYNMHLAKLVDGGRNAAATEFAIFLVQTCVIQEPGVSASELYNLIEALGKVAQRPGSPESLQQLIEDVRNVSSNAAGQNASSIGKEEKARQSRDKKAIPGRLGANRDDNKLTSRDGGSADPAGFREQVGSLFEDWARICDSPGVNDKAYAVYISQLQQSGMLKGDDISDRFFRVLTELSVQHCLASEISVPVSLPLPSQQMTQGLSFTLIDMYSKLVVLLVKYCAVDPGMSKVNLLNKVLAVTVRVIQRDAEDKKSAFHPRPYFRLFVNWLMDFNSPDPALDASNFQVLTAFANAFHSLQPLRVPGWSFAWLELISHRSFMPKLLLSNNQKGWPLVQRLLVDLFKFMEPYLRNAELSDPVRLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLPEISQSPRILSEVDAALKTKQLKSEVDEYLKTRQPMSIFIIDLKQRVLLPPHESVSAGTRYNVPLINSLVLYVGMQAIQQLQSKTTPQQLAVPTAPITHSAPMDIFQRLILDLDTEGRYLFLNAVANQLRYPNNHTHYFSCVLLYLFAEANQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRGFTHCAPEIEKLFESVARSCMGQSMKPVEDDIA
A9SJI9_______________ELTSWVIYSDEERRYNREITVGLIRSELINLSDYNVQLTKLMDGGRNKDAVDFAAYLVKTCVIEDSGVSNTEFYNVIDALGKLAARPDSPVSLQQLV-DVARTTSSSGRPGGTGFNKEDKIRLAKDRKVPSGRTSGLREDGNVGTRDIAAGDPAGLRDQVASLFDEWASICDAPGTSDKAYAVYVSHLQHSGMLKGDDISDRFFRILIELAVAHCLNSETVLPNSGLFDSSQQESNLSFAAIDMFAKLVLLLVKYY-VDPSMSKVNLLNKVMVVTVRVIQRDFHERRANFQPRPYFRLFVTWLQDLNAADPILDSSNFQVLTIFGTALLALQPLQVPGWSFAWLELISHRMFMPNLLLSNSPKGWPLFQRLLVALFKFMEPYLRNADVSDPIRLLYKGTLRVLLVLLHDFPEFLCDNHFTFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLPEISQAPHILYDVEPALKSKQLKAEVDEYLKTRNSQSFQSLDIKGQLILPASEVVPYGTKYNVPLLNALVLYIGMQAIQQMQTKITPQQLAIPTAPITQSAPMDIFQRLIIDLDTEGRYLFLNAVANQLRYPNNHTHYFSCVLLYLFAEANMEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSHSFTRCAPEIEKLFESVARSCMGPSLKPSDDDLA

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
1375			81	18	0.999994
1383	18			81	0.999994
1384			18	81	0.999994
1385	81	18			0.999994
1390			18	81	0.999994
1391			18	81	0.999994
1392		81		18	0.999994
1397		81	18		0.999994
1399	81	18			0.999994
1409	11	88			0.923564
1493			90	10	0.90298
1496			10	90	0.90298
1497		90		10	0.90298
1501	11		88		0.923564
1502		11	88		0.923564
1505		11		88	0.923564
1506		11		88	0.923564
1509	88		11		0.923564
1510	77		11		0.968132
1515		11		88	0.923564
1534	12	87			0.992554
1535		87	12		0.992554
1540	87	12			0.992554
1541		12		87	0.992554
1546		87		12	0.992554
1550		12	87		0.992554
1553		12		87	0.992554
1680		75		25	0.996473
1958	75		25		1.0
1993		87		12	0.992554
2013		12		87	0.992554
2237	85			14	0.993533
2239	85	14			0.993533
2241	14	85			0.993533
2244	85	14			0.993533
2245			85	14	0.993533
2260			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain