SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27045

Length: 2309 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27045
CGGTCGTGCACGCCATTATCTGCGGGCAACATCTAAATTTCCATTGTGATAGGATTAAAATAAATCTCTGTTCTGCAAGCTCTGTTTGCCCTTCCTCGCCTTCTCAGTTTGATAAAAAAATTCAGTGCAATATCTCCCCCAATTTTGAAGATTTGTCTAGGTTTGATTATCAAAATCAAAACCAGACATGGGTTTCAAGGAGGACCTGGAAAAGGCAGCTGTGGGGGTGAACGGCGACGTGAAGCGGCCTCTATTGGGTAACGAACATGGGAAAGAGTACTACAGAAGAAGTCATAAAAAGGGCAAGGGCAAGAGTTCCGAAGCCTTCCAAGGAAGCGTTGCAACTGCTCTATTTTGTACTGCGGTTGTCGCAATGGGGCCCTTGCAGTTCGGCTTCTGTAATGGATACTCGTCCCCTAGTGAGGATGGAATTATCAGTGACCTCAGCCTTTCTCTCTCACAGTATTCTGTGTTCGGCTCGCTATCAAATGTAGGAGCAATGGTGGGTGCCATAGTCAGTGGGCAAATTGCCGATTTCATCGGGCGTAAAGGGGCTTTGATAGTGGCTGTGATTCCAAATATTATTGGTTGGGTTACAATCTCTGTTGCAAAGGATGCTTCATTCCTGTATTTAGGGAGGTTACTGACAGGCTTTGGAGTGGGAGTCATTTCCTTCACTGTCCCTGTTTACATAGCAGAGATAGCTCCCAAACACTTGCGAGGTGGCCTTGGTGCAGCCAATCAGCTTTCTGTGACAATTGGTATCATGCTGGCATATTTGTTTGGGTTGTTCCTTGGTTGGAGGGCTCTAGCCGTTGCAGGTGTAGTTCCTTCTGCTCTTTTGGTTCTGGGGTTATTTTTTATTCCGGAATCTCCAAGATGGCTGGCTAAAATTGGTAATGATGATTTTGAAGCCTCATTGCAAGCTCTTAGAGGCAGTCAGGTTGATGTTTCCCTAGAAGCTGTTGAAATCAGGAGTGTTGTGGAGACAGGAAATCAACAACCCAGAATAAAGTTTTCCGAGATCTTTGAACGAAAATATGCAATGCCTCTGACTATTGGCATTGGGCTGCTTCTTTTACAACAGTTGAGTGGAATCAATGGTATTATGTTTTACAGCAGTTCCATTTTTAAGTCTGCTGGAATTTCATCTGGTAATGTTGCAACCCTTGGACTTGGTGCTGTTCAGGTTGTTATGACTGCTGTCAGTGCTGTGTTGATTGACAAAGCTGGTAGACGTCTCCTTCTTATGATCTCGTCTGCAGGGATGGCTGTTTGTCTTTTCCTGGTTGGCCTTGCCTTTTATTTAAAAAGCCACCTAGCGGGAGAATCACATCTTGTAACGTTCACCAGTATTTTGGCGGTGACAAGTTTGTTGGTTTACATTGTCTCTTTCTCCCTCGGTATTGGGGCTGTCCCCTGGGTTATCATGTCGGAGATACTTCCTGTTAATGTCAAGGGATTGGCTGGCAGTGTAGCAACATTGGCAAACTGGTCATCTTCTTGGTTGGTGACCATGACAATAAATTTACTTCTAGAATGGAGCACTGCAGGAACATTCTTTCTTTACGCTATCATATGTTCTTTGACGTTGGCGTTTGTCGCATTTTTTGTGCCTGAAACTAAGGGGCGGGCACTGGAGGAAATTGAGGCATCATTTAGATGAACTCAATTTGGAAAGATGTCTCACGTGTGATATTTTGTACTCGAGTAATTTGGTATCATATGCACACAGTTATTCTCCTATAGCAGATAAATTTTTTGAATGTGTGAAATTATTGCGCACTACAATAGCAGGAGCGATGGACAGCATGAAAGGGAAGACAAATCTGGTTATCTAACACCCACTCCTCAAAGGGAAGACAAACGTGGTTATCTAATACCCACTCCTCAGCTTCAGCCTTCAGTGTTGTAATAGTATTGTCCCTTCCAAGTGTTTCGTCATGAGAAGTTTGCAGCTGCGATAAATCATAATTTGTGAGTGAAGATCGTGGTTTTGGTTGAAGCTTTCACTTGTTAACATTAATGGATGAGGAAGGCTCCAGAGGTTCATTCCTGGACTCACTTTTTAGAGGGGAATGAATTCTATGTGAAGGTTTGTGTGCGAGCACATATTAATCAATCGAAACTATCGTTAGCTTCCACAAACTACCGATGATAAGTTAGGGGTGTCTTACATTATATAAGTAATTGCGTTTGTATTATTAATGAAAATACCTATAATGGTTTGTTTATCGGTGCTCCAATACTTACAAAATAATTGTAGATTTACAAATTTTGTAGATTTACAAATTAGGAGAGGGGAAATC

Ace file of the UniGene sp_v1.1_unigene27045

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9R7V2_RICCO	-	-	54%
FL-Next	sp=Sugar transporter ERD6-like 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	integral membrane protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transporter activity	GO:0005215	Molecular Function	78%
Blast2go	vacuole	GO:0005773	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Sugar/inositol transporter	IPR003663	-	78%
Blast2go	General substrate transporter	IPR005828	-	78%
Blast2go	Sugar transporter, conserved site	IPR005829	-	78%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	78%
Blast2go	Major facilitator superfamily domain	IPR020846	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FRL3

Fln msg:

Fln protein: MGFKEDLEKAAVGVNGDVKRPLLGNEHGKEYYRRSHKKGKGKSSEAFQGSVATALFCTAVVAMGPLQFGFCNGYSSPSEDGIISDLSLSLSQYSVFGSLSNVGAMVGAIVSGQIADFIGRKGALIVAVIPNIIGWVTISVAKDASFLYLGRLLTGFGVGVISFTVPVYIAEIAPKHLRGGLGAANQLSVTIGIMLAYLFGLFLGWRALAVAGVVPSALLVLGLFFIPESPRWLAKIGNDDFEASLQALRGSQVDVSLEAVEIRSVVETGNQQPRIKFSEIFERKYAMPLTIGIGLLLLQQLSGINGIMFYSSSIFKSAGISSGNVATLGLGAVQVVMTAVSAVLIDKAGRRLLLMISSAGMAVCLFLVGLAFYLKSHLAGESHLVTFTSILAVTSLLVYIVSFSLGIGAVPWVIMSEILPVNVKGLAGSVATLANWSSSWLVTMTINLLLEWSTAGTFFLYAIICSLTLAFVAFFVPETKGRALEEIEASFR*

Protein Length: 494

Fln nts: CGGTCGTGCACGCCATTATCTGCGGGCAACATCTAAATTTCCATTGTGATAGGATTAAAATAAATCTCTGTTCTGCAAGCTCTGTTTGCCCTTCCTCGCCTTCTCAGTTTGATAAAAAAATTCAGTGCAATATCTCCCCCAATTTTGAAGATTTGTCTAGGTTTGATTATCAAAATCAAAACCAGAC_-_ATGGGTTTCAAGGAGGACCTGGAAAAGGCAGCTGTGGGGGTGAACGGCGACGTGAAGCGGCCTCTATTGGGTAACGAACATGGGAAAGAGTACTACAGAAGAAGTCATAAAAAGGGCAAGGGCAAGAGTTCCGAAGCCTTCCAAGGAAGCGTTGCAACTGCTCTATTTTGTACTGCGGTTGTCGCAATGGGGCCCTTGCAGTTCGGCTTCTGTAATGGATACTCGTCCCCTAGTGAGGATGGAATTATCAGTGACCTCAGCCTTTCTCTCTCACAGTATTCTGTGTTCGGCTCGCTATCAAATGTAGGAGCAATGGTGGGTGCCATAGTCAGTGGGCAAATTGCCGATTTCATCGGGCGTAAAGGGGCTTTGATAGTGGCTGTGATTCCAAATATTATTGGTTGGGTTACAATCTCTGTTGCAAAGGATGCTTCATTCCTGTATTTAGGGAGGTTACTGACAGGCTTTGGAGTGGGAGTCATTTCCTTCACTGTCCCTGTTTACATAGCAGAGATAGCTCCCAAACACTTGCGAGGTGGCCTTGGTGCAGCCAATCAGCTTTCTGTGACAATTGGTATCATGCTGGCATATTTGTTTGGGTTGTTCCTTGGTTGGAGGGCTCTAGCCGTTGCAGGTGTAGTTCCTTCTGCTCTTTTGGTTCTGGGGTTATTTTTTATTCCGGAATCTCCAAGATGGCTGGCTAAAATTGGTAATGATGATTTTGAAGCCTCATTGCAAGCTCTTAGAGGCAGTCAGGTTGATGTTTCCCTAGAAGCTGTTGAAATCAGGAGTGTTGTGGAGACAGGAAATCAACAACCCAGAATAAAGTTTTCCGAGATCTTTGAACGAAAATATGCAATGCCTCTGACTATTGGCATTGGGCTGCTTCTTTTACAACAGTTGAGTGGAATCAATGGTATTATGTTTTACAGCAGTTCCATTTTTAAGTCTGCTGGAATTTCATCTGGTAATGTTGCAACCCTTGGACTTGGTGCTGTTCAGGTTGTTATGACTGCTGTCAGTGCTGTGTTGATTGACAAAGCTGGTAGACGTCTCCTTCTTATGATCTCGTCTGCAGGGATGGCTGTTTGTCTTTTCCTGGTTGGCCTTGCCTTTTATTTAAAAAGCCACCTAGCGGGAGAATCACATCTTGTAACGTTCACCAGTATTTTGGCGGTGACAAGTTTGTTGGTTTACATTGTCTCTTTCTCCCTCGGTATTGGGGCTGTCCCCTGGGTTATCATGTCGGAGATACTTCCTGTTAATGTCAAGGGATTGGCTGGCAGTGTAGCAACATTGGCAAACTGGTCATCTTCTTGGTTGGTGACCATGACAATAAATTTACTTCTAGAATGGAGCACTGCAGGAACATTCTTTCTTTACGCTATCATATGTTCTTTGACGTTGGCGTTTGTCGCATTTTTTGTGCCTGAAACTAAGGGGCGGGCACTGGAGGAAATTGAGGCATCATTTAGATGA___ACTCAATTTGGAAAGATGTCTCACGTGTGATATTTTGTACTCGAGTAATTTGGTATCATATGCACACAGTTATTCTCCTATAGCAGATAAATTTTTTGAATGTGTGAAATTATTGCGCACTACAATAGCAGGAGCGATGGACAGCATGAAAGGGAAGACAAATCTGGTTATCTAACACCCACTCCTCAAAGGGAAGACAAACGTGGTTATCTAATACCCACTCCTCAGCTTCAGCCTTCAGTGTTGTAATAGTATTGTCCCTTCCAAGTGTTTCGTCATGAGAAGTTTGCAGCTGCGATAAATCATAATTTGTGAGTGAAGATCGTGGTTTTGGTTGAAGCTTTCACTTGTTAACATTAATGGATGAGGAAGGCTCCAGAGGTTCATTCCTGGACTCACTTTTTAGAGGGGAATGAATTCTATGTGAAGGTTTGTGTGCGAGCACATATTAATCAATCGAAACTATCGTTAGCTTCCACAAACTACCGATGATAAGTTAGGGGTGTCTTACATTATATAAGTAATTGCGTTTGTATTATTAATGAAAATACCTATAATGGTTTGTTTATCGGTGCTCCAATACTTACAAAATAATTGTAGATTTACAAATTTTGTAGATTTACAAATTAGGAGAGGGGAAATC

Fln Alignment:

sp_v1.1_unigene27045___MGFKEDLEKAAVGVNGDVKRPLLGNEHGKEYYRR-SHXXXXXXXXEAFQGSVATALFCTAVVAMGPLQFGFCNGYSSPSEDGIISDXXXXXXQYSVFGSLSNVGAMVGAIVSGQIADFIGRKGALIVAVIPNIIGWVTISVAKDASFLYLGRLLTGFGVGVISFTVPVYIAEIAPKHLRGGLGAANQLSVTIGIMLAYLFGLFLGWRALAVAGVVPSALLVLGLFFIPESPRWLAKIG-NDDFEASLQALRGSQVDVSLEAVEIRSVVETGNQQPRIKFSEIFERKYAMPXXXXXXXXXXXXXXXXXXXMFYXXXXXXXXXXXXXNVATLGLGAVQVVMTAVSAVLIDKAGRRLLLMISSAGMAVCLFLVGLAFYLKSHLAGESHLVTFTSILAVTSLLVYIVSFSLGIGAVPWVIMSEILPVNVKGLAGSVATLANWSSSWLVTMTINLLLEWSTAGTFFLYAIICSLTLAFVAFFVPETKGRALEEIEASFR
Q9FRL3_______________MSFRDDNEEA----RNDLRRPFI---HTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTLEELQSLFR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
337		66		33	0.997452
659			66	33	0.997452
982			10	90	0.90298
983			10	90	0.90298
1350	83		16		0.999991
1351		83		16	0.999991
1357		16		83	0.999991
1358		16		83	0.999991
1364			83	16	0.999991
1367		16	83		0.999991
1370	83			16	0.999991
1371	83	16			0.999991
1372	16		83		0.999991
1765		12	81		0.999943
2240	12			87	0.992554
2241		12		87	0.992554
2242		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain