SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27041

Length: 2788 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene27041
CGTGACCTTGGCTGTCACTCAGGTATAAACAAAAACAGAACACAAACCATGACAAGAAACCCCACATGTGCCAGATCGATGTCGGACACACGAAAATGGCCACGGGTACACGTGGGCAATGAGCGAGCGGAGAGCAGGGACTACAAAGTGCTCCTTCTCCCGAAGAAAGGTTGATTTCATTGTTCATATGAAATGCCGATCACTTGGAGAATATGTTGAAGGGCGGACTGATTGCATCACTGCCAGATTATTGACAGGAAGGGTTTTGATTTTCTTGTTGGACGGGGAGAGGATGGGGTTGCCGCTGGTAATGGAGGTCCTGACCGAGCGTGCACACTTTATGAGGGAGAGTCTGAACAAAAGCCGGACTATCACGGACGGCATGGTTTCGATCCTTGGATCTTTCGATCACCGCCTCTCGGCCCTGGAAACCGCCATGCGTCCCACTCAGGTGCGCACACATGCAATCAGGAAAGCACATGAAAACATTGACAAGACCTTAAAGGCAGCAGAAGTAATATTAGCACAGTTTGATATTTCCCGCCAGGTAGAAGCTAAGATTATAAAAGGACCTCGTGAGGACCTTGAAAGTTATTTAGCTGCAGTTGATCAATTGCGCAACAATGTTGAATTTTTTAGCTCTAACAAAAGCTTCAAGAGTAGTGATGGAGTTCTCACCAATGCAAACAATTTGCTTGCTAAGGCAATGTTAAAACTTGAAGAAGAGTTTAAGCAACTTCTATCCACTTACAGCAAAGTTGTGGAGCCTGAGCGCTTGTTTGAGTGCCTTCCAAATTCCTTGAGGCCTTCATCAGGATCCCCGTCTAATCAAGGTGATCCAAATGGTAGGAAAATAAGTCCTATGAGCCATCATGAACAGATTGCAAAAGGCACTGAAGGATCTACATACACGGTTCCTACATTTATCCCTCCTAGAATAATCCCACAGTTACATGATTTGGTGCGACGCATGGTTGAAGCAGGTCACGAACAGCAGTGCCTAAAAATTTATAGGGATACAAGAGCTTCCGTTCTGGAGCAGAGCCTTCGAAAACTTGGAGTAGAAAAGCTGACCAAAGATGATGTGCAAAAGATGCAATGGGAAGTGCTAGAGGGGAAGATTGGTAATTGGATCCACTTTATGCGCATAGCTGTTAAGCTCTTATTTGCAGGGGAGCGGAAAGTGTGTGATCAAATTTTTGAAGATTTAGATCCTCTTGGAAATCAGTGCTTTGCTGAAGTAACAATGAGTAGTGTGATCATGTTGCTGAGTTTTGGAGAAGCAATTGCCAAAAGCAAGAGGTCACCAGAAAAGTTATTTGTACTTCTTGACATGTATGAAACAATGCGTGAGCTTCTACCAGAGATAGAAGTAATATTTGGAGGCAAAGCTTCTGCTGAAATGCGTGAAGCAGCTTTAAATCTCACAAAGAGACTGGCACAGACTGCTCAAGATACTTTTGGTGATTTTGAAGAAGCTGTTGAGAAAGATGCTACTAAGACTTCCATACTGGATGGAACAGTCCATCCTCTGACCAGTTACGTTATTAACTATGTGAAGTTCTTATTCGATTACCAATCAACATTGAAGCAACTTTTTCAAGAAAATGGGAATGGAGGTTCTTCAAATTCTCAGTTGGCGGTTGCAACAAAGCGAATAATGTCTGCGCTTCAAACCAATCTGGATGGGAAATCGAAGCAGTATAAAGATCCTGCACTGACACATCTCTTTATTATGAACAACATTCACTACATGGTTAGATCTGTACGCAGGTCAGAAGCAAAAGATTTACTGGGGGATGAATGGGTACAAATTCATCGTCGAATAGTACAGCAGCATGCAAATCATTACAGAAGAAATGCTTGGGGCAAGATTTTGCAATGCCTTACTGTGCAAGGCTTGAGTTCCTCTGGTAGTGGTGGACTTGGTACAGAAGGAAGCACCAGCAGTAGTGTTTCCAGAGCTCTTTTGAAGGAAAGGTTCAAAGCGTTTAATATGCAATTTGAAGAGCTTCACCAACGGCAAACTCAATGGACTGTTCCCGACAATGAGCTGCGTGAGTCTCTACGTTTGGCAGTGGCTGAGGTTCTCTTACCAGCTTATCGTCAATTTCTTAAACGCTTTGGATCTTTGTTAGACAACGGAAAAAATCCCCAGAAGTACATAAAATATACTCCCGAAGATTTGGATAGGATGCTAAGTGAATTCTTTGAAGGAAAACCAAGGGGAGATCCAAGACGGTAGGTGGAATTCTTGAATTTTTGTATATTTACATGACATTTCTATGTAAATTATGTGGTGTAATTTGAACACCCCTTGTAATATTTTTCCATGTTCAAAATGCAAGGTGGTAACTCTAGCTGAATCTCTAACCAATATTCATACATTAATTAAGAGCCGACTTAGTTGCATGTATTTTTCCGTTGGTTCTGATCAAATTATTCATAAATAAAGCCTGATTCGAGTAGCGTCAATAGCTTGGCAGAGTAATTTATAAATCATGTTGTGATGCATATGGTTCGAGGATAATGTGTCCATCCCTTTTGATTATGTATATTTGCAGCCCAAGATGTTCCTGTTTTCTGTGTTCTATTTATTTTATTTGTTGTTTCACGAGCCATCTACTAGTGGACGATTTCTTTAGATGATGGTTACAATGCGGCTTTATTAGAAACTAGTAGGTGCTTCTTAGTCCAATTTTACAAATGACACTTTTTCTTTGTTCTCTTTCAAGTTGTTTAATTAGCACAATGATCGAAACTATTACCCTATGCATATACATTTGAT

Ace file of the UniGene sp_v1.1_unigene27041

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	84%
Blast2go	exocyst	GO:0000145	Cellular Component	84%
Blast2go	membrane	GO:0016020	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exo70 exocyst complex subunit	IPR004140	-	0.0	84%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM1

Fln msg: your sequence is longer than subject: 709 - 647

Fln protein: MSERRAGTTKCSFSRRKVDFIVHMKCRSLGEYVEGRTDCITARLLTGRVLIFLLDGERMGLPLVMEVLTERAHFMRESLNKSRTITDGMVSILGSFDHRLSALETAMRPTQVRTHAIRKAHENIDKTLKAAEVILAQFDISRQVEAKIIKGPREDLESYLAAVDQLRNNVEFFSSNKSFKSSDGVLTNANNLLAKAMLKLEEEFKQLLSTYSKVVEPERLFECLPNSLRPSSGSPSNQGDPNGRKISPMSHHEQIAKGTEGSTYTVPTFIPPRIIPQLHDLVRRMVEAGHEQQCLKIYRDTRASVLEQSLRKLGVEKLTKDDVQKMQWEVLEGKIGNWIHFMRIAVKLLFAGERKVCDQIFEDLDPLGNQCFAEVTMSSVIMLLSFGEAIAKSKRSPEKLFVLLDMYETMRELLPEIEVIFGGKASAEMREAALNLTKRLAQTAQDTFGDFEEAVEKDATKTSILDGTVHPLTSYVINYVKFLFDYQSTLKQLFQENGNGGSSNSQLAVATKRIMSALQTNLDGKSKQYKDPALTHLFIMNNIHYMVRSVRRSEAKDLLGDEWVQIHRRIVQQHANHYRRNAWGKILQCLTVQGLSSSGSGGLGTEGSTSSSVSRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDNGKNPQKYIKYTPEDLDRMLSEFFEGKPRGDPRR*

Protein Length: 710

Fln nts: CGTGACCTTGGCTGTCACTCAGGTATAAACAAAAACAGAACACAAACCATGACAAGAAACCCCACATGTGCCAGATCGATGTCGGACACACGAAAATGGCCACGGGTACACGTGGGCA_-_ATGAGCGAGCGGAGAGCAGGGACTACAAAGTGCTCCTTCTCCCGAAGAAAGGTTGATTTCATTGTTCATATGAAATGCCGATCACTTGGAGAATATGTTGAAGGGCGGACTGATTGCATCACTGCCAGATTATTGACAGGAAGGGTTTTGATTTTCTTGTTGGACGGGGAGAGGATGGGGTTGCCGCTGGTAATGGAGGTCCTGACCGAGCGTGCACACTTTATGAGGGAGAGTCTGAACAAAAGCCGGACTATCACGGACGGCATGGTTTCGATCCTTGGATCTTTCGATCACCGCCTCTCGGCCCTGGAAACCGCCATGCGTCCCACTCAGGTGCGCACACATGCAATCAGGAAAGCACATGAAAACATTGACAAGACCTTAAAGGCAGCAGAAGTAATATTAGCACAGTTTGATATTTCCCGCCAGGTAGAAGCTAAGATTATAAAAGGACCTCGTGAGGACCTTGAAAGTTATTTAGCTGCAGTTGATCAATTGCGCAACAATGTTGAATTTTTTAGCTCTAACAAAAGCTTCAAGAGTAGTGATGGAGTTCTCACCAATGCAAACAATTTGCTTGCTAAGGCAATGTTAAAACTTGAAGAAGAGTTTAAGCAACTTCTATCCACTTACAGCAAAGTTGTGGAGCCTGAGCGCTTGTTTGAGTGCCTTCCAAATTCCTTGAGGCCTTCATCAGGATCCCCGTCTAATCAAGGTGATCCAAATGGTAGGAAAATAAGTCCTATGAGCCATCATGAACAGATTGCAAAAGGCACTGAAGGATCTACATACACGGTTCCTACATTTATCCCTCCTAGAATAATCCCACAGTTACATGATTTGGTGCGACGCATGGTTGAAGCAGGTCACGAACAGCAGTGCCTAAAAATTTATAGGGATACAAGAGCTTCCGTTCTGGAGCAGAGCCTTCGAAAACTTGGAGTAGAAAAGCTGACCAAAGATGATGTGCAAAAGATGCAATGGGAAGTGCTAGAGGGGAAGATTGGTAATTGGATCCACTTTATGCGCATAGCTGTTAAGCTCTTATTTGCAGGGGAGCGGAAAGTGTGTGATCAAATTTTTGAAGATTTAGATCCTCTTGGAAATCAGTGCTTTGCTGAAGTAACAATGAGTAGTGTGATCATGTTGCTGAGTTTTGGAGAAGCAATTGCCAAAAGCAAGAGGTCACCAGAAAAGTTATTTGTACTTCTTGACATGTATGAAACAATGCGTGAGCTTCTACCAGAGATAGAAGTAATATTTGGAGGCAAAGCTTCTGCTGAAATGCGTGAAGCAGCTTTAAATCTCACAAAGAGACTGGCACAGACTGCTCAAGATACTTTTGGTGATTTTGAAGAAGCTGTTGAGAAAGATGCTACTAAGACTTCCATACTGGATGGAACAGTCCATCCTCTGACCAGTTACGTTATTAACTATGTGAAGTTCTTATTCGATTACCAATCAACATTGAAGCAACTTTTTCAAGAAAATGGGAATGGAGGTTCTTCAAATTCTCAGTTGGCGGTTGCAACAAAGCGAATAATGTCTGCGCTTCAAACCAATCTGGATGGGAAATCGAAGCAGTATAAAGATCCTGCACTGACACATCTCTTTATTATGAACAACATTCACTACATGGTTAGATCTGTACGCAGGTCAGAAGCAAAAGATTTACTGGGGGATGAATGGGTACAAATTCATCGTCGAATAGTACAGCAGCATGCAAATCATTACAGAAGAAATGCTTGGGGCAAGATTTTGCAATGCCTTACTGTGCAAGGCTTGAGTTCCTCTGGTAGTGGTGGACTTGGTACAGAAGGAAGCACCAGCAGTAGTGTTTCCAGAGCTCTTTTGAAGGAAAGGTTCAAAGCGTTTAATATGCAATTTGAAGAGCTTCACCAACGGCAAACTCAATGGACTGTTCCCGACAATGAGCTGCGTGAGTCTCTACGTTTGGCAGTGGCTGAGGTTCTCTTACCAGCTTATCGTCAATTTCTTAAACGCTTTGGATCTTTGTTAGACAACGGAAAAAATCCCCAGAAGTACATAAAATATACTCCCGAAGATTTGGATAGGATGCTAAGTGAATTCTTTGAAGGAAAACCAAGGGGAGATCCAAGACGGTAG___GTGGAATTCTTGAATTTTTGTATATTTACATGACATTTCTATGTAAATTATGTGGTGTAATTTGAACACCCCTTGTAATATTTTTCCATGTTCAAAATGCAAGGTGGTAACTCTAGCTGAATCTCTAACCAATATTCATACATTAATTAAGAGCCGACTTAGTTGCATGTATTTTTCCGTTGGTTCTGATCAAATTATTCATAAATAAAGCCTGATTCGAGTAGCGTCAATAGCTTGGCAGAGTAATTTATAAATCATGTTGTGATGCATATGGTTCGAGGATAATGTGTCCATCCCTTTTGATTATGTATATTTGCAGCCCAAGATGTTCCTGTTTTCTGTGTTCTATTTATTTTATTTGTTGTTTCACGAGCCATCTACTAGTGGACGATTTCTTTAGATGATGGTTACAATGCGGCTTTATTAGAAACTAGTAGGTGCTTCTTAGTCCAATTTTACAAATGACACTTTTTCTTTGTTCTCTTTCAAGTTGTTTAATTAGCACAATGATCGAAACTATTACCCTATGCATATACATTTGAT

Fln Alignment:

sp_v1.1_unigene27041___MGLPLVMEVLTERAHFMRESLNKSRTITDGMVSILGSFDHRLSALETAMRPTQVRTHAIRKAHENIDKTLKAAEVILAQFDISRQVEAKIIKGPREDLESYLAAVDQLRNNVEXXXXXXXXXXXDGVXXXXXXXXXXXXXXXXXXXXQLLSTYSKVVEPERLFECLPNSLRPSSGSPSNQGDPNGRKISPMSHHEQIAKGTEGSTYTVPTFIPPRIIPQLHDLVRRMVEAGHEQQCLKIYRDTRASVLEQSLRKLGVEKLTKDDVQKMQWEVLEGKIGNWIHFMRIAVKLLFAGERKVCDQIFEDLDPLGNQCFAEVTMSSVIMLLSFGEAIAKSKRSPEKLFVLLDMYETMRELLPEIEVIFGGKASAEMREAALNLTKRLAQTAQDTFGDFEEAVEKDATKTSILDGTVHPLTSYVINYVKFLFDYQSTLKQLFQENGNGGSSNSQLAVATKRIMSALQTNLDGKSKQYKDPALTHLFIMNNIHYMVRSVRRSEAKDLLGDEWVQIHRRIVQQHANHYRRNAWGKILQCLTVQXXXXXXXXXXXXXXXXXXXXXRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDNGKNPQKYIKYTPEDLDRMLSEFFEGKPRGDPRR
A9NWM1_______________MGVPLVMEILTERAHFMRESLNKSRTITDGMVSILGSFDHRLSALETAMRPTQVRTHAIRKAHENIDKTLKAAEVILAQFDISRQVEAKIIKGPRDDLESYLAAVDQLRNNVEFFSSNKSFKSSDGVLTNANNLLAKAMLKLEEEFKQLLSTYSKVVEPERLFECLPNSLRPSSGSPANQGDPNGRKIS---HHEQIANGTEGSTYTIPTFIPPRIIPQLHDLVRRMVEAGHQQQCLKIYRDTRACVLEQSLRKLGVEKLTKDDVQKMQWEVLEGKIGNWIHFMRIAVKLLFAGERKVCDQIFEDLDPLGNQCFAEVTMSSVIMLLSFGEAIAKSKRSPEKLFVLLDMYETMRELLPEIEVIFGGKASAEMREAALSLTKRLAQTAQDTFGDFEEAVEKDATKTSILDGTVHPLTSYVINYVKFLFDYQSTLKQLFQENGNGGPSNSQLAAATMRIMSALQTNLDGKSKQYKDPALTQLFLMNNIHYMVRSVRRSEAKDLLGDDWVQRHRRIVQQHANHYRRNAWGKILQCLTVQGLSSSGSGGLGTDGSTSSSVSRALLKERFKAFNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDNGKNPQKYIKYTAEDLDRMLGEFFEGKPRGDPRR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
272	25			75	0.996473
530	88			11	0.923564
531		11	88		0.923564
532	12			87	0.992554
533		12		87	0.992554
535		12	87		0.992554
1185	88			11	0.923564
1186	88		11		0.923564
1188			11	88	0.923564
1910		12		87	0.992554
1951		85	14		0.993533
1952	85		14		0.993533
1993	14		85		0.993533
1995			14	85	0.993533
1996			14	85	0.993533
1997	85		14		0.993533
2114		14		85	0.993533
2125	12	87			0.992554
2127			12	87	0.992554
2128			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain