SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene27018

Length: 1215 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene27018

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	proline-rich family protein-like [Oryza sativa Japonica Group] gb\|EAZ13951.1\| hypothetical protein OsJ_03877 [Oryza sativa Japonica Group]	-	-	5.0e-22	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	0.0	48%

Source	InterPros	Term	Type	e value	Identity
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	0.0	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0E3

Fln msg:

Fln protein: MENRSIEVCIISARGLKRSNPLYKLRTLCVAWINLEHKYCSKIDKIGDTHPTWNMKFSCIVDALKLEEDKELASLQVEVHSQEPLFHSSKLECSATIPLKEFVAKSNNADGDYTESASFQLRTPSGKARGLVDVCIKVGRRFDPQASYDSGSSTSTNGVTFEEDAEPVTAYPAAPPSKMPSGRPGNFPPPNFPYTYPVQETPASAQGPARPPHNFNYPRPPIRPPMASQPVPPFMGSWPQENYIGLPGSRPARNNYAGAGQHQGLGLGAGALAGAAAGGLMFGLDGTALQNGLSDSIMSQFHGGSLSISSDPFFPCNIHQF*

Protein Length: 323

Fln nts: GTGACCTTGGCTGTCACTCAAGCTTCCTCTCACAGAAATCAATGATTCCATTGAAGCCATGGGGTGCCCTTCTTACGATCAAAGGCAAGATGGTCCGACTCCAATGTGGTAAATAGGAATATGAGAAGGAGGTCGCAGGTTCGAC_-_ATGGAAAATCGATCGATAGAGGTCTGCATAATCTCTGCCAGGGGTCTCAAGCGGAGCAATCCCCTGTACAAGCTCAGAACCCTATGCGTGGCATGGATAAACCTCGAGCACAAGTACTGCAGCAAAATCGACAAGATCGGAGACACGCACCCCACCTGGAACATGAAATTTTCTTGCATCGTCGATGCCCTCAAGCTCGAAGAAGACAAAGAATTAGCGTCTCTGCAAGTAGAAGTCCACAGCCAGGAGCCGCTTTTCCACTCTTCGAAGCTTGAATGCAGCGCAACCATTCCGCTCAAAGAATTCGTGGCCAAATCCAACAATGCAGACGGAGACTACACCGAGTCGGCCAGTTTCCAGCTCCGGACCCCATCTGGTAAGGCGCGGGGATTGGTTGATGTGTGTATAAAGGTAGGTCGCAGGTTCGATCCGCAGGCCTCGTACGATTCAGGGTCTTCGACTTCGACAAATGGAGTCACTTTTGAAGAGGATGCTGAACCAGTGACTGCTTATCCGGCGGCTCCACCGTCAAAAATGCCGTCGGGACGCCCGGGTAATTTCCCGCCCCCTAATTTCCCTTACACTTACCCTGTCCAAGAAACCCCAGCCTCGGCTCAGGGTCCTGCCCGTCCTCCTCACAATTTTAATTATCCTCGCCCTCCAATTCGGCCCCCGATGGCGAGCCAACCAGTGCCGCCATTTATGGGTTCGTGGCCACAGGAGAATTACATAGGCTTGCCCGGATCGCGTCCTGCGAGAAACAACTACGCCGGTGCCGGACAGCATCAGGGTTTGGGGCTCGGAGCGGGGGCTCTGGCAGGCGCCGCGGCGGGAGGATTGATGTTTGGCCTCGACGGGACGGCGTTGCAGAACGGGCTCAGTGACTCCATAATGTCGCAGTTCCATGGCGGGTCTCTGAGTATTTCCTCTGATCCTTTCTTTCCATGTAACATTCATCAATTCTAG___TTTGTTCTGTGTTTGCTTCGAAGGTCACTAGGCGTCATTTGACGTTCTTGAATTTGCGTCAAGTGATGAAGAACGTTAGGGTTTCAGAACAATGATCTTGACCG

Fln Alignment:

sp_v1.1_unigene27018___MENRSIEVCIISARGLKRSNPLYKLRTLCVAWINLEHKYCSKIDKIGDTHPTWNMKFSCIVDALKLEEDKELASLQVEVHSQEPLFHSSKLECSATIPLKEFVAKSNNADGDYTESASFQLRTPSGKARGLVDVCIKVGRRFDPQASYDSGSSTSTNGVTFEEDAEPVTAYPAAPPSKMXXXXXXXXXXXXXXXXXXVQETPAS------AQGPARPPHNFNYPR-PPIRPPMASQPVPPFMGSWPQENYIGLPGSRPARNNYXXXXXXXXXXXXXXXXXXXXXXXXMFGLDGTALQNGLSDSIMSQFHGGSLSISSDPFF
A9P0E3_______________MEKRSIEACIISARGLKRSNPLCKMRTLCVAWINPEHKYCSNIDKIGNTHPTWNMKFSCILDARELEEDPELASLHVEVHSQEPLFHYSKLECSATIPLKEFVAQSNNADEDYTESASFQLRTPSGKARGMVDVWIRVGRRFDPQAPYDQG--YSTNGISSEDSGEPVTAYPADLRPSMPSGRPDNFPPPKFPYTYPLEETPASAPAPAPAQGPSRPPRNSYYPRPPPVRPPMASQPVPPFMGSWPTENYIGLPGSRPAGNNYAGAGQHQGLGLGAGVLAGAAAGGLMFGLDGTPLQNGLGDSIMSQFHGGSLSISSDPFF

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
294	66			33	0.997452
296		66	33		0.997452
297		66		33	0.997452
298		66	33		0.997452
303			66	33	0.997452
305	66		33		0.997452
306	66	33			0.997452
307		66		33	0.997452
308	66		33		0.997452
310		33	66		0.997452
312	66	33			0.997452
313	66			33	0.997452
314		33		66	0.997452
315	33			66	0.997452
692		85		14	0.993533
694		85	14		0.993533
695		85	14		0.993533
764			87	12	0.992554
766	12			87	0.992554
771		87	12		0.992554
773		87		12	0.992554
780	12	87			0.992554
823		11	88		0.923564
825		88		11	0.923564
828		11	88		0.923564
830		88		11	0.923564
831	88			11	0.923564
832	88		11		0.923564
833		88	11		0.923564
835	88			11	0.923564
838		11	88		0.923564
839	11	88			0.923564
841			88	11	0.923564
843	11	88			0.923564
933	88			11	0.923564
1021			66	33	1.0
1024		66	33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain