SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26979

Length: 1568 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26979

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_34.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SZU8_VITVI	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	sag18 (senescence associated gene 18)	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	senescence	GO:0010149	Biological Process	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ceramidase	IPR008901	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8N4

Fln msg:

Fln protein: MMTLAQIKDSRACVWLVALFCFIALMIVTPVIPQSQEYHNFADQRNFFGVPNTLNVISNFPFLIIGVVGLILCLYGNHFSLSFQGEVWGWVFFYIGVTATAFGSAYYHLKPDDARLVWDRLPMTIAFTSIMAVFIIERIDENTGTMSLFPLLMAGIVSIAYWRYFDDLRPYALVQFIPCIAIPAMTILLPAMYTHSIYWLWAAGFYLLAKLEEAADKPIYKCTHYTISGHSLKHLCAAMVPVFLTIMLSRRCIEIERQFQLMKKTDEDGLSGSIQG*

Protein Length: 278

Fln nts: TTTGCGCGAAACTACATCGCAGACGCCTTTCAATGTCAGAACGAGGAATTGGGGGGGACAAGTAACGATATATCCCCATTCTACCGCTGCATGCTCTCATACCCCCAGCCCCTGTAACGAAGAAACACACAGGGTTGAATATTACCCAACAATTATATATATATAAATAATACACAGGCAAAAGAATACCTAACCTGGCATATACTGAATTGAAAATCAATCA_-_ATGATGACGCTGGCGCAAATTAAGGATAGCAGGGCTTGTGTGTGGTTGGTTGCCTTGTTCTGTTTCATTGCGCTGATGATTGTGACGCCTGTCATTCCACAGTCCCAGGAGTATCACAATTTTGCAGACCAACGCAACTTTTTCGGGGTGCCCAATACCTTGAATGTGATATCAAACTTCCCCTTTTTGATTATTGGTGTTGTTGGACTGATACTATGCCTTTACGGAAATCATTTCAGTCTAAGTTTCCAAGGAGAGGTGTGGGGTTGGGTTTTCTTTTATATAGGAGTTACTGCAACTGCTTTTGGCTCTGCTTATTATCATCTCAAACCAGATGATGCACGACTTGTATGGGATCGTTTACCTATGACTATTGCATTCACTTCAATCATGGCTGTCTTCATCATTGAGAGGATTGATGAAAATACAGGGACTATGTCTCTTTTTCCTCTTCTTATGGCGGGCATTGTCAGCATTGCTTACTGGAGGTATTTTGATGACCTTAGGCCCTATGCTCTGGTCCAGTTTATTCCATGTATTGCGATTCCAGCAATGACTATTTTACTGCCAGCGATGTATACACATTCTATATACTGGTTATGGGCAGCAGGATTTTATCTCTTGGCTAAACTGGAAGAGGCAGCAGATAAGCCAATTTACAAATGTACTCATTACACCATAAGTGGCCATTCTTTGAAGCACCTGTGTGCTGCGATGGTTCCTGTTTTCCTTACAATCATGTTGTCTCGTAGGTGCATTGAAATTGAGAGACAGTTTCAGTTGATGAAGAAGACAGACGAGGATGGTTTAAGTGGAAGTATTCAAGGCTAA___CAACACAAGCAGAAGGTCCAGATCGACCAACTTCTTTGTGAAAGCCTAAAGGCTATTCTATGGTGTTTACTTCACCAATAGAACAACACTCATCATGTATGATACTGCAATTCTCACTGTTGGAGGGACTTTGTGAAGAATCACGAAACTTTAAAGTACGTACTTCAAAATTGTATATACTTCAGCTCCACGAAAGTATGGATTTCAACTTTCAAGATGTACAATGCTCTTATAATTTCTTTATATACCATCCTCCCAACTTATGATTTTCTGTTAATGGAACCACAATTGCATCATGCAAATAAAAATTGGATCCTCAGAAAAGTTGTGCACTTGTAGGTTTCTATGCTTGAATGGTGCATGGGATTGCATGGGTGAACAAGAAACTATTTTGATGGTTGTTTTCACATCACTGAACCCAATAGTCAAATCAATATGGTAGATATGCATTGGTGTTTTTGTACATAGGGTACCAATGCATGGTATCATGGCATCTTGCATTCAGTCGATGCCT

Fln Alignment:

sp_v1.1_unigene26979___MMTLAQIKDSRACVWLVALFCFIALMIVTPVIPQSQEYHNFADQRNFFGVPNTLNVISNFPFXXXXXXXXXXCLYGNHFSLSFQGEVWGWVFFYIGVTATAFGSAYYHLKPDDARLVWDRLPMTIAFTSIMAVFIIERIDENTGTMSLFPLLMAGIVSIAYWRYFDDLRPYALVQFIPCIAIPAMTILLPAMYTHSIYWLWAAGFYLLAKLEEAADKPIYKCTHYTISGHSLKHLCAAMVPVFLTIMLSRRCIEIERQFQLMKKTDEDGLSGSIQG
D5A8N4_______________MTTLERIKDSRACVWCVALFCFIALMVVTPVIPQSQEYHNFADRRNFFGVPNTLNVISNFPFLIIGVVGLILCLYGNHFSLSLQGEVWGWVFFYVGVTATAFGSAYYHLKPDDARLVWDRLPMTIAFTSIMAVFIIERIDEKTGTMSLFPLLMAGIVSIAYWRYFDDLRPYALVQFIPCIAIPAMTILLPAMYTHSIYWLWAAGFYLLAKLEEAADKPIYKWTHYTISGHTLKHLCAAMVPVFLTIMLSRRSIEIERQFQLMKKTDEDGSSGSIQG

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
441	66		33		0.997452
449			33	66	0.997452
450	66		33		0.997452
454			66	33	0.997452
455	66	33			0.997452
457	66	33			0.997452
485		25	75		0.996473
490	25			75	0.996473
492	25		75		0.996473
493		25	75		0.996473
494		25	75		0.996473
503	14			85	0.993533
504		14		85	0.993533
947		20	80		0.995493
951	20			80	0.995493
958		20		80	0.995493
960			20	80	0.995493
963	20	80			0.995493
964		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
154	165	TA TA TA TA TA TA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain