SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26963

Length: 1802 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26963

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase I 49 kDa polypeptide, putative; K03005 DNA-directed RNA polymerase I subunit A49 [EC:2.7.7.6]	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	50%

Source	ECs	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	34%

Source	KEGGs	Term	Identity
AutoFact	Purine metabolism	00230	34%
AutoFact	Pyrimidine metabolism	00240	34%
AutoFact	Metabolic pathways	01100	34%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNA5

Fln msg:

Fln protein: MESPGQSSKKRKRKRTLVQTEYIPPQSGFGCPFVGYFPSGYDPVKNGDASSSLEVGVYQNTRKIKSKQLQLVARPKEASVDFVGTNYSGENSLWQPCNYLMGVFDKETSTLKLVPISGGRIFRMEARVQGMEYSRADAVEENAEELTAENRQRKHQLLTATFGTHKSILQAKRRDKSRLKEEALGDQSGIGKLFEEVAKKTTVLTSAEALALANANIVRNIPPYDASATKPEKVYLLESIILKEEWDQQPNVGELIAAGTNARATAEFQRSDYPLFVRTRIHKLGSESDKGRDRLAHILSYITHLLNFKDMPFHAIKRLLKARTTLEHNTGDKETARLMESSKIPGVTLAKFLKLFTDSKESTQSREKTDLLISYILVLTLMADGFETHPSDIAADLKMIVPDVKSRYQELGCKARGSQNNLKILLPCPTHFSDHERNSKEEKVDVTL*

Protein Length: 450

Fln nts: TCGTGACCTTGGCTGTCACTCAACATAGAAAGGAATAATAGGCTTTTTAGTAGAGAAGCATTTTCCAATAGTAGAAACACCAGGTATGTAGAAATCAAGAGGTATTGAGTCGTGGAATGGGTTTATAAGATTTTTCAGGCGAGAATAGAGTTTAGTATAGTTTAGGTTTAACAACCAAAATGGACACAAACCCTATTATGCCGTAAACTCTGGTCCTGAACTCTCGCTGCTGCGAAACTTATTCATCTCGGTTTGTCTTTCTATCATTTCATTTTTCTACAGTATAGAACATATTGCACTCTTCATTCCACAGATCTGCAGGGGCATTCATTGCGTTTAAGG_-_ATGGAGTCTCCTGGTCAGAGCAGCAAGAAGAGAAAGAGGAAGAGAACCCTAGTCCAGACAGAATACATTCCACCGCAGAGCGGCTTTGGATGTCCCTTCGTCGGCTACTTTCCTTCAGGATACGATCCCGTCAAAAATGGCGACGCCTCCTCCAGTTTAGAGGTAGGAGTCTACCAGAACACCAGGAAAATTAAGTCCAAGCAACTGCAACTAGTCGCAAGGCCGAAAGAGGCAAGCGTAGACTTCGTGGGCACCAATTATTCGGGAGAAAATTCACTGTGGCAGCCTTGCAACTATCTCATGGGCGTCTTCGACAAAGAAACTAGTACTCTCAAGCTCGTACCCATTTCCGGCGGAAGGATTTTCAGAATGGAAGCAAGAGTGCAAGGAATGGAATACAGCAGAGCAGATGCCGTGGAAGAAAATGCTGAAGAACTTACAGCCGAGAACAGACAGAGGAAACACCAACTCCTTACGGCTACTTTCGGAACACACAAGAGCATTTTACAGGCAAAACGTCGCGACAAGTCAAGATTAAAGGAAGAAGCCCTAGGAGACCAAAGTGGGATTGGAAAACTGTTCGAAGAAGTAGCAAAGAAGACAACAGTATTAACAAGTGCAGAGGCACTTGCTCTAGCCAATGCTAATATAGTTAGAAATATTCCTCCCTATGATGCATCAGCCACCAAACCAGAAAAGGTTTATCTGCTAGAGAGTATTATACTCAAAGAGGAATGGGATCAACAGCCTAATGTTGGTGAACTGATTGCAGCTGGAACAAATGCTCGAGCAACTGCAGAATTTCAGCGAAGTGATTATCCTCTTTTTGTTCGCACTCGTATACATAAATTGGGATCCGAGAGTGATAAAGGGCGGGATAGGCTTGCTCATATATTGTCATATATAACCCATCTTTTGAACTTTAAGGATATGCCATTTCATGCCATTAAAAGGTTATTGAAGGCAAGGACTACACTAGAGCATAACACAGGTGACAAAGAAACAGCACGTCTAATGGAGTCATCGAAAATTCCTGGTGTTACTCTTGCTAAATTTTTGAAGCTATTTACAGATTCAAAAGAGAGCACACAATCAAGGGAAAAAACAGACCTGCTTATCAGTTATATCCTTGTACTAACTCTTATGGCAGATGGGTTTGAAACTCACCCATCAGATATTGCAGCAGATTTGAAAATGATCGTTCCAGATGTAAAATCTCGTTACCAAGAATTGGGCTGTAAAGCTCGTGGTTCACAAAATAATCTAAAAATTTTACTACCCTGTCCCACTCACTTTTCCGACCATGAACGAAATAGTAAGGAGGAGAAGGTAGATGTCACTTTGTGA___CCTTTTTCTAAGGTGTTATTCTACGGAGTTACTTTTATAATATATACCCTCGCTTCCACTATACTAGAAATTTCTTGTCAATATAGTTAAACAACAAGTATTATGATTGTTGA

Fln Alignment:

sp_v1.1_unigene26963___MESPGQSSKKRKRKRTLVQTEYIPPQSGFGCPFVGYFPSGYDPVKNGDASSSLEVGVYQNTRKIKSKQLQLVARPKEASVDFVGTNYSGENSLWQPCNYLMGVFDKETSTLKLVPISGGRIFRMEARVQGMEYSRADAVEENAEELTAENRQRKHQLLTATFGTHKSILQAKRRDKSRLKEEALGDQSGIGKLFEEVAKKTTVLTSAEALALANANIVRNIPPYDASATKPEKVYLLESIILKEEWDQQPNVGELIAAGTNARATAEFQRSDYPLFVRTRIHKLGSESDKGRDRLAHILSYITHLLNFKDMPFHAIKRLLKARTTLEHNTGDKETARLMESSKIPGVTLAKFLKLFTDSKESTQSREKTDLLISYILVLTLMADGFETHPSDIAADLKMIVPDVKSRYQELGCKARGSQNNLKILLPCPTHF
B8LNA5_______________MESSGKSSKKRKRKRTLVQTEYIKPQSGFGCPFVGYFSSGYDPLKKGDASSSLEVGVYQNTRKFKTKQMELVARPKEANVDFVGTNYSGENSLWQPCNYLMGVFDKETSTLKLVPISGGRIFRMEARVQGMEYMSAVAEEENAEELTAENRQRQYQLLTATFGTHKSRLEAKRRDKSRLKEEALGDQSGIGKLFEEAAKNTTVLTSKEALARANANIVRNIPPYDASATKPEKVYLLENIILKEEWDQQPNIGELIAAGTNARAAAEFQRSDYPLFVRSRIDKLGSESGKGRDRLAHILSYITHLLNFKAMPLHAIKRLLKARTTLEHDTDDKETARLMESSKIPGVTLAKFLKLFTDSKESTRSREKTDLLISYILVLTLMADGFETHPSDIAADLKMIVPDVKSHYQELGCKARGTQNNLKISLPIPLTF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
245	90		10		0.90298
249		88	11		0.923564
250	11		88		0.923564
251		12	87		0.992554
252		12		87	0.992554
256			11	55	1.0
257		66		33	1.0
258		33		66	1.0
259			11	77	0.968132
264	12			87	0.992554
265	87	12			0.992554
313	87	12			0.992554
965		72	27		1.0
1030	90		10		0.90298
1280		90		9	0.999842
1330	89		10		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain