SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26961

Length: 790 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26961

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to JAZ12/TIFY3B (JASMONATE-ZIM-DOMAIN PROTEIN 12) n=1 Tax=Vitis vinifera RepID=UPI0001984611	-	-	5.0e-06	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	CO/COL/TOC1, conserved site	IPR018467	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ92

Fln msg: Separated hits, possible frame ERROR between 491 and 554, STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 237 - 269

Fln protein: MSPGASVAFEDLHVQNASEANGRVMKDGKYSIEFGPEKHQTRTRFMQHLSRIKPQMMLKLLASNEQSEGKKDEVLELFPLTTGFGSNPRVTESNTSLPSEIGLTNPNCVVAEVPEKLSTSQFTIFYNGVVNVYDIPxxxxxxxxxxxxxxxxxxxxxxTSGKIEEISGEQPSKSALNAVNENQPQKVAAGMEIVKKLSLQRFLQKRKERLNSVAPYSTVETATLPSKAGKDSDDQII

Protein Length: 238

Fln nts: AAGGAGTATAGCTTCGGGAAAAGGGTAGATTGCAGTGGAACTTTGGTGATTTATCGGAACAATATTTGAGTTAGCAAGCT_-_ATGTCGCCAGGTGCATCTGTGGCTTTCGAGGATCTACACGTTCAGAACGCCTCTGAAGCAAACGGAAGAGTAATGAAGGACGGTAAATATAGTATTGAATTCGGTCCTGAAAAACACCAAACCAGGACAAGATTCATGCAACATCTGTCGCGGATAAAACCGCAGATGATGCTCAAGTTGCTTGCATCGAACGAACAGTCAGAGGGCAAGAAGGATGAAGTTTTGGAATTGTTTCCATTAACCACCGGTTTCGGTTCAAACCCAAGAGTTACAGAATCAAATACAAGCTTGCCTTCGGAAATCGGCCTCACTAATCCGAACTGCGTTGTAGCAGAAGTGCCAGAGAAACTATCCACATCTCAATTCACTATTTTTTATAACGGAGTGGTGAATGTTTACGATATTCCTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTACCAGCGGCAAAATTGAAGAGATATCGGGAGAGCAGCCTTCCAAATCTGCGTTGAACGCTGTCAATGAAAATCAACCTCAAAAAGTGGCAGCAGGCATGGAAATAGTGAAGAAATTATCTCTGCAACGCTTCCTCCAAAAGCGAAAGGAGAGATTGAACAGCGTGGCTCCTTACAGCACGGTGGAGACGGCGACATTGCCTTCGAAAGCAGGGAAGGATTCCGATGACCAGATCATA

Fln Alignment:

sp_v1.1_unigene26961___MSPGASVAFEDLHVQNASEANGRVMKDGKYSIEFGPEKHQTRTRFMQHLSRIKPQMMLKLLASNEQSEGKK----------------------DEVLELFPLTTGFGSNPRVTESNTSLPSEIGLTNPN---CVVAEVPEKLSTSQFTIFYNGVVNVYDIPAxxxxxxxxxxxxxxxxxxxxxTSGKIEEISGEQPSKSALNAVNENQPQKVAAGMEIVKKLSLQRFLQKRKERLNSVAPYSTVETATLPSKAGKDSDDQII
A9NQ92_______________MSPSASVAFEYLRFQNASEANETVL-NGSNSLEFSPGKHQAKPRLMQDLSRIKPQMMLKLLSSNKLSEDTKLDFAHVNRQAEGFNKQSEATSHAKMIELFPVSTGFGSDPRVTETKITLPLEIGLTDPNSSRCVLAEVPAKPSTAQLTIFYNGAVNVYDMPAxxxxxxxxxxxxxxxxxxxxxTSSKIEQILQHQPSKPALNAINENQPQRLAVGMEIVMKLSLQRFLQKRKERLNSVAPYSTMETETSPWKAGKDSDDQII

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
176			50	50	1.0
368		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain