SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26955

Length: 1352 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26955

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glutaredoxin family protein	-	-	7.0e-28	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	glutaredoxin protein family-like	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Glutaredoxin	IPR002109	-	73%
Blast2go	Glutaredoxin active site	IPR011767	-	73%
Blast2go	Glutaredoxin, eukaryotic/virial	IPR011899	-	73%
Blast2go	Thioredoxin fold	IPR012335	-	73%
Blast2go	Thioredoxin-like fold	IPR012336	-	73%
Blast2go	Glutaredoxin subgroup	IPR014025	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRF8

Fln msg:

Fln protein: MASLKPCACKGLSYWRANESPVAPPVTPEFVGLSAKKIYHPLTATQSRSHEYGIRSMCASAGSKLEFSIKEKIRENPLIIYSKTRCPYCRAVKDLFNRLGVKPMVVELDELGPAQYQLKNALKRLTGQSTVPNIFIGGKHIGGCSETMALHKKGELIPLLSASGLKVS*

Protein Length: 170

Fln nts: CGTGACCTTGGCTGTCACTCAATTACCACACTGCTGACTAAGTGAGCATACCACAGAACAGAAGCCAACAGAACACGAGCACTGTACTGAGTGTTAACCACTCAACCACAACCGCACAAGAGGGGCCTGCTCCTCCAATGAGCAGATCACAAAACACAAGCACCGTACTCAGAACTCAACAACCCAACGACAACCCAACAAGAACAGTTACTCCTCCAATGAGAAGATGACAGAACACAAGCACTATACTAAGGATTGAACCAGCCAAAGATAATCGCCCAAGAGGGGATTAGCTCTGGGTCCTCTATGACGCATATGACCCGATTAAATTCTCAGCCAATAGAAAAAAAATTATCACACAGGAGAAGCAATAACAATGCTTAAGCACTGACAGTACATACTAGATTCAGTAGCGCAAGAGAAAAGAAGAGAAAATAACTACCGCATTTCTACATTCTACAATCTGCATTGCAAGAGAGAAGAAACGAAAATAAGAA_-_ATGGCTTCGCTGAAGCCCTGTGCTTGCAAAGGGCTGAGCTATTGGAGAGCAAATGAAAGTCCCGTGGCTCCTCCCGTTACCCCTGAATTTGTGGGCCTCTCTGCTAAAAAAATTTATCATCCTTTAACGGCGACACAGAGCAGAAGCCATGAGTATGGCATTAGAAGCATGTGTGCCTCAGCAGGCTCTAAGCTAGAATTCTCCATTAAAGAAAAGATAAGGGAGAACCCACTAATAATCTACTCTAAAACTCGGTGTCCGTATTGCCGTGCGGTGAAGGATCTTTTCAACCGTCTGGGGGTTAAGCCCATGGTCGTTGAATTGGATGAGCTCGGACCTGCGCAATATCAGTTAAAGAATGCATTGAAGAGGCTAACTGGACAATCAACAGTACCTAATATCTTCATCGGTGGCAAGCACATTGGAGGCTGCAGTGAGACAATGGCATTGCATAAAAAGGGAGAACTTATTCCCTTGCTTTCAGCTTCTGGACTTAAAGTGTCTTAG___TATCAAGATAAGCATGTTAAGTATAAATTGGAACAAGAGGGGCTTTCCAAAAACAATCAGTCAGCTGCGGATTAGATGGGTTGATACACAGCTATACAGTGAACTTTTTCTTTTTCTTTTTGTATTTTCCATTTAGCATGAAGATGACTTTTGTTTGAAAGAGAGAAACAATTCAAAAAGAAGGGCATTATATTATCCTCGTCATTGTGAGAGATTGAATACCCATTGTCTACCTGTATTTCTTTCTACAATTTGTTTTTCAAAGTAAAGAAATGATATCATCATACAAATTGATGACACATACCGACTGAGCAGGTATAGTATTCAAAACTTATTGATTTCTTGAAA

Fln Alignment:

sp_v1.1_unigene26955___VTPEFVGLSAKKIYHPLTATQSRSHEYGIRSMCASAGSKLEFSIKEKIRENPLIIYSKTRCPYCRAVKDLFNRLGVKPMVVELDELGPAQYQLKNALKRLTGQSTVPNIFIGGKHIGGCSETMALHKKGELIPLLSASGLKVS
B8LRF8_______________VIPEFVALSAQKFHHPLTATQSRSHGYGIISMCASVGSQIEFSIKDKISENPLIIYSKTRCPYCRAVKTLFNRLGVKPVVVELDELGPAQYQLKNALKRLTGQSTVPNIFIGGKHIGGCSETMALHKKGELIPLLSASGLKVS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
596	33	66			0.997452
598		66	33		0.997452
599			33	66	0.997452
609	33			66	0.997452
710	87		12		0.992554
711	87			12	0.992554
727		88		11	0.923564
728	22		77		0.999999
797		10	90		0.90298
800		10		90	0.90298
801	90		10		0.90298
802	90			10	0.90298
804	10	90			0.90298
807	90			10	0.90298
815			10	90	0.90298
816			90	10	0.90298
817	90	10			0.90298
821		18	81		0.999994
907	15		84		0.999986
1047		66		33	0.997452
1198	14			85	0.993533
1199	85	14			0.993533
1325			75	25	0.996473
1328			25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1108	1125	CTTTTT CTTTTT CTTTTT	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain