SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26951

Length: 1043 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26951

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	voltage-dependent anion-selective channel, putative; K05862 voltage-dependent anion channel	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Porin, eukaryotic type	IPR001925	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRG5

Fln msg: your sequence is shorter than subject: 235 - 276

Fln protein: KFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNAIVDVKIDTNSNILTTITLDQPIPHAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGHDEISVDGEMAFDTASEYTAAVILADKGDTVKASYTHIVNPISKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLGALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP*

Protein Length: 236

Fln nts: AAAATTTACTGTGACTACATTCAGCGAGACTGGACTGGCATTTACATCGACTGGTGTAAAGAAAGGGGAACTGTTTTCTGGAGATCTCAACACACAGTACAAATATCAAAATGCAATCGTGGATGTGAAAATTGATACAAATTCTAACATCTTAACAACAATCACTCTTGATCAACCCATTCCACATGCAAAGACTATTTTCAGCTTCAAAATACCAGATCAGAAGTCCGGCAAGGTGGACTTGCAGTACTTTCATGATCATGTGGGATTAAGCTCAAGCATTGGTTTGACACCTACTCCCATTGTTGAGGTCTCTGGTGCACTTGGTCATGATGAAATTTCAGTTGATGGTGAGATGGCCTTTGACACTGCATCAGAGTACACTGCAGCTGTGATACTGGCTGATAAGGGGGACACTGTGAAGGCCTCATATACACATATAGTGAATCCTATTTCAAAGACTGCAGTTGCGGCTGAATTCACCCACAAGTTTTCGACAAATGAGAACACTTACACAGTTGGGAGTTCACATGCTATTGATCGTCTTACCACAATGAAATCACGACTTGACAATCGTGGGAAACTTGGTGCTCTTATCCAACACGAGTGGAGGCCTAAATCACTAGTAACAATTTCTGGAGAATTTGACACCAAGGCTCTTGATAAGAGTGCCAAAATTGGTTTGTCATTGGCATTAAAGCCTTGA___GATAATCTAGTCAGAAATTTAAGTTTAGCCTGTTTTGATTCTTCTTGGATGTGATCTAATATTTTTTTTGAAGTAATCTGGAGGCAGAATGCAGGCATTGACTATTTCTCAAATTCTGAAGAGATTTAAACCTGCTGCCATGCATTCTGTAACTGGGCAACTAGTCGGTTGAATAATTTATTCATGGAAGCTTGTGGCAATAATAGTGTTTCTCTTCAACTGTTATTTTTGATCTCCCATGGAAACCGTTAGCATGAGTAATATTCCCTATTGTTTGTTAATTTTCCCTGCCCTCAAGCAACATGTTGAGATCTTTTATATGGTATCATTTTTAAAA

Fln Alignment:

sp_v1.1_unigene26951___KFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNAIVDVKIDTNSNILTTITLDQPIPHAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGHDEISVDGEMAFDTAS---------------EYTAAVILADKGDTVKASYTHIVNPISKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLGALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP
A9NRG5_______________KFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNATVDVKIDTNSNILTTITLDQPIPNAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGSDGISVGGEMAFDTASSTFSKYSAGIGVSKPEYTAAVILADKGDTVKASYTHIVNPITKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLAALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain