SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26936

Length: 894 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26936 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavonoid 3'-hydroxylase n=1 Tax=Epimedium sagittatum RepID=D5M8Q3_9MAGN	-	-	8.0e-29	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	cytochrome p450	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	62%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	0.0	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ07

Fln msg: Distance to subject end: 293 aas, your sequence is shorter than subject: 250 - 549

Fln protein: MAVSSSSSLTITLMLMFMLFGTSTGQRITMAFARMDFIPAIVSLVIVAVAILWHWQRQYRSMPPGPTRWPLVGSLLSVGFEYRHRTYAQLAKRYGPVMHFCLEGANVIVVCSPEAAMEVLKTKDSEWASRPPTLSGKYIGVDFHALDFAPNGPHWRHLRKICATHIFSPARLRAQGYIRREEVLRIVDHVFSQSQRAVGLGLGEPIDLRSVTYSLMDNIISRVLFGNKYTEPDHPIAKVMHSFRDDVQEA

Protein Length: 251

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCGTCCGGTGAGCGCAGGCGACCATTAGACTAGAATGGTTGCCTCTGGTAGGAATTGATTGATTAATACCCAGAAGAGAACAGAGGAAGGAGTTGTCGAGGTGTAAAATCTCATACC_-_ATGGCTGTCTCCTCCTCCTCCTCCTTAACAATTACGCTTATGTTGATGTTCATGTTGTTTGGCACATCGACAGGCCAACGAATAACGATGGCATTCGCTAGGATGGATTTCATCCCAGCGATTGTATCGTTAGTGATAGTTGCAGTAGCAATTTTGTGGCACTGGCAGCGGCAGTATCGGTCAATGCCTCCGGGGCCTACTCGATGGCCCCTGGTTGGCTCTCTGTTGTCAGTAGGATTTGAATACAGGCATCGCACTTATGCCCAACTTGCCAAAAGGTACGGGCCTGTTATGCATTTCTGCCTTGAGGGTGCAAATGTTATTGTGGTTTGTAGTCCAGAGGCGGCCATGGAAGTCCTCAAAACCAAGGACTCAGAGTGGGCGTCCAGGCCACCAACACTTTCAGGGAAATACATTGGGGTTGATTTCCACGCCCTGGATTTCGCACCCAATGGCCCTCACTGGCGCCACCTGAGGAAAATATGCGCTACCCACATATTTTCTCCCGCAAGATTAAGGGCGCAGGGTTATATCCGAAGAGAGGAAGTCCTCCGCATTGTGGACCACGTCTTCTCACAATCCCAAAGAGCCGTAGGTTTAGGTTTAGGAGAACCCATTGATCTGAGAAGTGTGACTTATTCTTTAATGGACAATATCATTTCCCGAGTGTTGTTCGGTAACAAGTACACCGAACCCGACCATCCTATTGCCAAGGTCATGCACTCCTTCAGGGATGACGTACAGGAGGCCAT

Fln Alignment:

sp_v1.1_unigene26936___QRITMAFARMDFXXXXXXXXXXXXXILWHWQRQYRSMPPGPTRWPLVGSLLSVGFEYRHRTYAQLAKRYGPVMHFCLEGANVIVVCSPEAAMEVLKTKDSEWASRPPTLSGKYIGVDFHALDFAPNGPHWRHLRKICATHIFSPARLRAQGYIRREEVLRIVDHVFSQSQRAVGLGLGEPIDLRSVTYSLMDNIISRVLFGNKYTEPDHPIAKVMHSFRDDVQEA
C0PQ07_______________ERTMMAFVSVKSIRAIVSLSIVAIAILCHWQRQYRSMPPGPVRWPLVGSLLSVGFQQRHRTYARLANKYGPVMHFCIENANVIVVGSPEVALEVLKTKDAEWASRPPTLSGKYIGVDFHALDFAPNGPHWRHLRKICATHIFSPARLRAQSYIRREEVLRIVDGIFSQSQRGLGLGLGEAIDLRSVSYSLMDNIISRVLFGNKYSQSDHPIAKVMHSFRDDVQEA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
720	83		16		0.994512
722			16	83	0.994512
725	16			83	0.994512
726		16		83	0.994512
728	83		16		0.994512
729		16	83		0.994512
730		16	83		0.994512
732	16		83		0.994512
734	83		16		0.994512
735			83	16	0.994512
736		16	83		0.994512
738		16	83		0.994512
741		16	83		0.994512
803	40		60		1.0
868	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
728	744	AGG AGG AGG AGG AGG AG	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain