SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26932

Length: 1331 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26932

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HSL6_POPTR	-	-	3.0e-23	56%
FL-Next	sp=Ethylene-responsive transcription factor ABI4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Blast2go	ap2 erf domain-containing transcription factor	-	-	5.87607e-23	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	5.87607e-23	74%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	5.87607e-23	74%
Blast2go	seed development	GO:0048316	Biological Process	5.87607e-23	74%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	5.87607e-23	74%
Blast2go	response to water deprivation	GO:0009414	Biological Process	5.87607e-23	74%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	5.87607e-23	74%
Blast2go	response to trehalose stimulus	GO:0010353	Biological Process	5.87607e-23	74%
Blast2go	triglyceride catabolic process	GO:0019433	Biological Process	5.87607e-23	74%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	5.87607e-23	74%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	5.87607e-23	74%
Blast2go	promoter binding	GO:0010843	Molecular Function	5.87607e-23	74%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	5.87607e-23	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: A0MES8

Fln msg:

Fln protein: MKGGNREAQCSAVGQESGGRTSPTTVRPSMRCKCKRKGGPDNIKFQYRGVRQRSWGKWVAEIRQPGKRTRRWLGTFATAEQAAQAYDNAAILLYGSKAHLNLQPSGWDQSKSSSHSSKLRPLLPRITVTRPPAIHGTIPGPNPNPNISGAFPCGYFGTLKIPDFWPAAMRAAHTDVTYHHPVIDPKRETTIEQRSVFHLEESRVPTQQCNGKEVLHLESSPLKTDKLQENFRTENTGLQSHRLGDPDQLSGIQGGIVGDELSQGFYSETAGNVTEPRNHFDGESRDDNLAASLHELQYSGGPLRHPVSCGTIISNTTITTTRPKAARCPRPTTNSGIIPIKVLFSCRFCSTLKPLS*

Protein Length: 358

Fln nts: CGTGACCTTGGCTGTCACTCAAGGGAGGAAGGAAGCATCCGTCCTTGACTCGGAGTTTAAATTCATGCAGAGGGGTATCAGCGGTGGAGGCACAGCAGAGGCAGAATTTGCCCATTTATTCTTGTTTCAGGCCGTCAAGAGAT_-_ATGAAAGGCGGAAATCGAGAAGCACAGTGTTCAGCGGTTGGCCAAGAGAGCGGTGGACGCACCAGCCCCACAACTGTACGGCCCTCCATGAGGTGCAAGTGTAAGCGCAAGGGAGGGCCGGACAACATCAAGTTCCAATACAGAGGCGTTCGGCAACGCAGTTGGGGAAAATGGGTTGCAGAGATCAGACAGCCCGGAAAACGAACCAGAAGGTGGCTAGGCACGTTTGCTACAGCCGAGCAGGCCGCGCAGGCTTACGACAACGCTGCGATCTTACTCTACGGCTCCAAAGCCCATCTTAATCTCCAGCCCTCTGGTTGGGATCAGTCCAAATCCTCCTCCCACTCCTCTAAACTCAGGCCACTGCTCCCGCGCATTACGGTTACACGTCCGCCGGCTATTCATGGTACTATCCCTGGCCCTAACCCTAACCCTAATATTTCTGGAGCCTTTCCATGTGGTTATTTTGGAACCCTTAAGATTCCAGATTTCTGGCCAGCCGCGATGAGAGCAGCACACACCGACGTTACATATCACCATCCCGTTATCGACCCAAAGCGGGAAACAACAATTGAGCAGCGTAGCGTCTTTCATCTGGAAGAATCTAGGGTTCCTACACAGCAGTGCAATGGCAAGGAAGTACTGCATCTTGAATCCTCTCCATTGAAAACAGATAAGCTCCAAGAAAATTTCAGAACCGAGAATACGGGACTGCAATCTCATAGACTGGGTGACCCTGATCAGCTGTCTGGGATTCAAGGTGGTATCGTCGGCGATGAGCTCAGTCAAGGCTTTTATAGCGAGACCGCTGGGAACGTTACCGAGCCAAGAAACCATTTTGATGGAGAATCGAGAGATGATAATCTTGCTGCTTCCTTGCACGAGTTGCAGTACAGCGGTGGCCCTCTCCGTCACCCGGTTTCATGTGGCACTATAATATCAAACACGACTATTACTACGACGAGACCAAAAGCAGCACGTTGCCCGAGACCGACAACCAACTCTGGGATTATTCCGATTAAAGTTCTATTTAGTTGCAGGTTTTGTTCGACTCTGAAACCACTTTCATGA___CCGGGCCTGCGTTAAAGAAGGGCTGCAATTCACGGACCGTCAAACCAAAATAACTGTCCTGTCATGATGTCTTCGTGGCTTATTGATCTGCACAGCATTCACGAGTAAATGCCAAGG

Fln Alignment:

sp_v1.1_unigene26932___SMRCKCKRKGGPDNIKFQYRGVRQRSWGKWVAEIRQPGKRTRRWLGTFXXXXXXXXXXXXXXILLYGSKAHLNLQPS
A0MES8_______________SAQRKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPS

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
450		88	11		0.999937
451	88			11	0.999937
453	11	88			0.999952
461		12		87	0.999964
464			87	12	0.999964
465		12	87		0.999964
579	90	10			0.90298
580	90		10		0.90298
581		10		90	0.90298
584			10	90	0.90298
585	10			90	0.90298
586		90	10		0.90298
589		10	90		0.90298
624	90	10			0.90298
629	90			10	0.90298
630		10	90		0.90298
672	90		10		0.90298
678		90	10		0.90298
683			10	90	0.90298
684		90	10		0.90298
733			12	87	0.992554
734	12			87	0.992554
736	87	12			0.992554
742	87	12			0.992554
743	87			12	0.992554
745	87			12	0.992554
746	87	12			0.992554
747	12			87	0.992554
750	87	12			0.992554
751	12		87		0.992554
777	14		85		0.993533
778	14	85			0.993533
956		10	84	5	0.999846
957	84		15		1.0
958	89			10	0.999919
962			11	88	0.999937
966			82	11	0.999919
967	81			18	1.0
969		81	12	6	0.999943
972	80	6		13	0.999961
974	80	6		13	0.999961
975	86	13			0.999973
1047		37		6	1.0
1049	6			37	1.0
1061	14		70		1.0
1062	14		85		1.0
1080	93	6			0.999364
1143	90			6	0.997073
1144	93			6	0.999153
1146			6	93	0.999153
1148	6			93	0.999153
1150			93	6	0.999153
1168			6	93	0.999153
1173		25		75	1.0
1185	6			93	0.999153
1326		92		8	0.999718

SSRs (tot: 1)

Start position	End position	Sequence	Length
563	580	CCCTAA CCCTAA CCCTAA	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain