SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26929

Length: 1127 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26929

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dehydroascorbate reductase, putative	-	-	8.99634e-43	44%
FL-Next	tr=Dehydroascorbate reductase; Pinus bungeana (Lacebark pine).	-	-	0.0	49%
Blast2go	dehydroascorbate reductase	-	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B2ZHM6

Fln msg:

Fln protein: MSDLEVFGKAAPGTGSPSKERGDCPFSQRIFLELEELGLPYTATYIQEGPNKPHWFMVKNPSGLMPVLRDGETWIQDSDKIAEYLDKHYAENTLKTPVEFRDVGSKIFPIFTKWLQSKDPGSPCRDEFVEELVRFDRHLQKHGPYIAGERPTDSDFALAPKLRHARVALAHFMDFQFPEELGALQSYMNRMESRESFEKTNYPDEMIIQGWRAKFNLPEKIANVPN*

Protein Length: 228

Fln nts: AAGTTCTATTCATTCATCAAAACT_-_ATGTCAGACCTCGAAGTTTTTGGTAAGGCTGCTCCAGGAACCGGGAGCCCAAGCAAGGAGAGAGGAGATTGCCCGTTTTCACAGAGGATTTTCTTAGAACTGGAAGAACTTGGCTTGCCTTATACTGCAACTTACATCCAGGAAGGACCCAACAAACCCCACTGGTTTATGGTGAAAAATCCTTCTGGACTGATGCCCGTTCTTAGAGATGGGGAAACATGGATCCAAGACTCTGATAAAATTGCAGAATATTTAGACAAGCACTATGCCGAGAATACCCTAAAAACCCCTGTGGAATTCAGGGATGTTGGGAGTAAAATCTTTCCGATATTTACAAAATGGCTCCAAAGCAAGGATCCCGGCAGCCCCTGTAGAGATGAATTTGTGGAGGAGCTCGTACGGTTTGATCGCCATTTGCAGAAACATGGACCATATATAGCTGGGGAGAGGCCTACGGATTCAGATTTTGCATTGGCACCTAAGCTTCGCCATGCCCGAGTGGCCTTGGCTCATTTCATGGACTTTCAATTTCCCGAGGAGCTCGGCGCACTGCAGAGCTACATGAATCGGATGGAATCTCGAGAGAGCTTTGAGAAGACCAATTATCCGGATGAAATGATCATCCAAGGGTGGCGTGCGAAATTTAACTTACCAGAGAAAATCGCCAATGTTCCCAACTGA___GCAAGCTTCTCAATTTATATCCGTAGACGACTCTTAAATGTGGACGATTTGTCTGTAAATGTATAGTCATGGATATGTAAATGTATAGTCATGGATATCTGAAACTGAAACTTATTTATGTATGAAGTGTGTATACAGAGGAGTTTCTCCAAATCGTCGTCTTCGATGAAGATTCTCCCTCCGAATCTGGAAAAAGTTCCCTACCCGTGTTACCATGGCTGGTCAATAAAGTGTGTTATTGGTGAAGATAATAAAGATCCTCACTCCTGCTGCTCTGCTCCGATGACATCTCCTTAGTCTTAATGAAATTGGTGTTTCAGTTATCTAATGGTCTCCCATTACACCATGCAATTCAGAATTTGTGATTATTCCAAACTTTCAGTTTGAATATTTTTATAAACAGTAATGTTCTTCGGCTCCAA

Fln Alignment:

sp_v1.1_unigene26929___LEVFGKAAPGTGSPSKERGDCPFSQRIFLELEELGLPYTATYIQEGPNKPHWFMVKNPSGLMPVLRDGETWIQDSDKIAEYLDKHYAENTLKTPVEFRDVGSKIFPIFTKWLQSKDPGSPCRDEFVEELVRFDRHLQKHGPYIAGERPTDSDFALAPKLRHARVALAHFMDFQFPEELGALQSYMNRMESRESFEKTNYPDEM-IIQGWRAKFN
B2ZHM6_______________LEVFVKAA--TGAPDK-LGDCPFSQRVLLTLEEKQVPYNMKLIDTS-NKPEWFLQINPEGKVPVIKIDDKWIPDSDVITQILEEKYPEPPLATPPEKATVGSKIFSTFIGFLKSKDPNDGTEQALLNELRAFDEYLKDNGPFINGEKISAADLSLAPKLYHMKVALGHFKKWSVPEEFTYVQSYMKAVFSRESFQRTNAADEQYIIAGWFPKVN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
635		50	50		1.0
704		66		33	1.0
826		28		71	1.0
847		29	70		1.0
1013	28	71			1.0
1027			66	33	1.0
1028		16		83	0.994512
1029		16		83	0.994512
1033	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain