SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26926

Length: 1843 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26926

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAM protein n=1 Tax=Petunia x hybrida RepID=Q40880_PETHY	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	no apical meristem-related protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS66

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 107 aas, putative chimeric sequence, your sequence is shorter than subject: 214 - 324

Fln protein: MIMGSSSRSSGNTGEEGLPPGFRFHPTDEELVSCYLVRKVLDNNFSGIAIAEADLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDKEIFKVHTERLIGMKKTLVFYRGRAPKGEKTNWVMHEYRLEGHLSYHQLSKNCKDEWVVCRIYHKNSGGKKITPGFINRNFYSDECMGSHSLPALFGIPFLYHQRSSY*

Protein Length: 215

Fln nts: TGACCTTGGCTGTCACTCATTTGTTTTTGTCCCCCCTATTGCTACAGAGGTTGTGGAGGAGTTTCGAGTCATTTGGAGAGTGTTTCTGAGAGAGTTTGTGGTATAATTTGAAGGA_-_ATGATAATGGGGTCATCGAGTAGGAGTTCAGGGAATACTGGCGAGGAAGGTTTGCCGCCAGGATTCAGGTTCCATCCCACGGATGAAGAATTGGTGTCTTGCTACCTGGTCCGGAAGGTTCTCGACAACAATTTCTCAGGGATCGCCATTGCCGAGGCCGACCTGAATAAGTGCGAACCATGGGATCTTCCAGAAAAGGCAAAGATGGGAGAGAAAGAATGGTACTTCTTCAGCTTGCGAGACCGCAAGTATCCAACAGGTTTACGTACGAACAGAGCCACAGAAGCTGGCTACTGGAAAGCTACAGGAAAGGACAAGGAGATTTTCAAAGTTCACACTGAGAGGTTGATTGGAATGAAGAAAACTTTGGTGTTCTACCGAGGGCGAGCTCCAAAAGGAGAGAAGACTAACTGGGTCATGCATGAATATCGTTTGGAAGGCCACTTATCGTATCATCAGCTTTCTAAAAACTGCAAGGATGAATGGGTGGTGTGTCGCATCTATCATAAAAATTCAGGAGGCAAGAAGATAACACCAGGCTTCATAAACAGGAACTTTTATAGTGATGAATGCATGGGGTCTCACTCCTTGCCTGCACTTTTTGGAATCCCCTTCTTATACCACCAGAGGAGTTCATACTGA___AGAAACTGAACTCTCAGACATGGGCAACATTAATCTCTGCAACAACAACAGCATTTTATCAAATGACCCTCAATTTAATATGAATATGAGGACAAGCAATCCAATGTCATGTCTTTTTCCTCAAATGTCATGCAGTGGGAGTTTCCCAGGTGTCTCTTCACAGATGGGGTTGCCATCAAATCCTATCCTCATGGCCCTTGCTGAACAGTTTTCAGTAAGTGAATTGAATCTGAAACAGTGCAAAATGGAGCAGACTTCATCTGCAGCTAATAATGATAACAGTGTCAAAATTTCCCATCAAGAGCAATGGCATATGGGTCGATCTCGAAATGACCAGCAGCAGATAAACATGGAGAACAGTGGGATTTCTCAGAATCCAACCATGGAATCCCATGGTATTGATCCACAAGACCATACTGCTATGTGCTTAAATCCGGATCAAATGAATCCTATCATGTTTAATCGAGTGATTCGACCATACCAACTGGATCCCTCACCAGAAGCAACTCCAACACTGGACCTAGATTCCTTGTGGGGTTATTGATTTTTCAACTTTGTACAGTTACAGTACTGATTTGAAGCGAGGGGACTTACAATACCTAGCAGATTTTTATTTTTTTACTGGTTTGAAGCTTTGCCAATGTGTATGTAATATGGGAAGATTGTGGTTTGTACATTAGTACAGAAAAAAGCCGGAGGCTGACATGCAGCCATTTACTAAATCAGTTAGAGACATCCCAGGATTCTCAGATTCAACTCCGGACGAAGGCAGCTAGTTTTGGTGCTCTAGAATATCCTGTATTCAGTGTTCATGTTATTATCACACACGTATAGTTTGTGATTGAATATTTTCTTTCATTTTGGTCCTAGCAATTTGTGATTTAGCATGCTGCTGTTATATGTCGTCGTGTCCATCACATTCTTGGCAGTGTGAATGTAATAAGATGTAAATTTGGGTTTCAGTGGGCTTGATTGATTCATTGACTTACTCATCATTGTAAATTTATACACAAACTATTCCGATTTGCTTCTCTTTATGGCTGTACATTTATACACAATCAATTATTGAGATTGATTCATTGACTC

Fln Alignment:

sp_v1.1_unigene26926___LPPGFRFHPTDEELVSCYLVRKVLDNNFSGIAIAEADLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDKEIFKVHTERLIGMKKTLVFYRGRAPKGEKTNWVMHEYRLEGHLSYHQLSKNC--KDEWVVCRIYHKNSGGKKITP
A9NS66_______________LPPGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGLNRMKVGVKKALVFYKGKAPRGIKTNWIMHEYRLADSASKAAKRKGSIRLDDWVLCRIYEKHYASQKAVP

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
464		14	85		0.993533
465	85		14		0.993533
467		14		85	0.993533
471	85	14			0.993533
472		14		85	0.993533
473			85	14	0.993533
474	85			14	0.993533
475	83		16		0.994512
477	83	16			0.994512
478	83			16	0.994512
479	83		16		0.994512
480	83			16	0.994512
482	16			83	0.994512
483		16		83	0.994512
485		16	83		0.994512
486	16		83		0.994512
740		80	20		0.995493
741	20	80			0.995493
742	80		20		0.995493
1211		37		62	1.0
1681		90	10		0.90298
1684			10	90	0.90298
1685	10	90			0.90298
1686			10	90	0.90298
1689	10		90		0.90298
1695		10		90	0.90298
1696		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain