SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26905

Length: 1116 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene26905 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Initiation factor 3g n=4 Tax=Arabidopsis RepID=Q9C5Y9_ARATH	-	-	65%
FL-Next	sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	initiation factor 3g	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	74%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	74%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNT0

Fln msg: your sequence is shorter than subject: 214 - 306

Fln protein: TGSRLTMVSTEEILLERPKAPGAKEDDSRSGGGDPLAAALAGAAKGGAVLMVCRICGKKGDHWTSKCPYKDLAPAAAEGLGLDKPPQAPDSAAGAGAAGGKGAYVPPSLRAGATVDRTSDASNMRRRNDENSVRVTNLSEDTREADLQELFKPFGHITRVYVAVDRRDLG*SLSFGFINFANREDAQRAINKLNGYGYDNLILRVEWATPRQT*

Protein Length: 215

Fln nts: CACAGGCAGCAGGCTTACCATGGTCTCTACTGAAGAGATCCTGCTCGAGCGGCCCAAGGCCCCTGGCGCCAAGGAGGATGACTCTAGGTCCGGTGGCGGCGATCCTCTCGCAGCCGCGCTTGCAGGGGCGGCCAAGGGCGGTGCCGTTCTCATGGTCTGTCGAATTTGTGGCAAAAAGGGTGATCACTGGACCTCAAAGTGCCCCTACAAAGACCTTGCCCCTGCCGCTGCGGAGGGCCTTGGTCTAGACAAACCCCCTCAAGCTCCTGACTCTGCCGCCGGCGCTGGTGCCGCCGGTGGCAAGGGAGCCTACGTTCCTCCTAGTCTTAGAGCCGGCGCCACGGTAGACAGGACCTCTGATGCTAGCAACATGAGGCGGAGAAACGACGAGAATTCCGTTAGGGTTACTAATTTGTCCGAGGATACCAGAGAGGCCGACTTGCAGGAGCTTTTCAAGCCGTTTGGTCACATTACGCGTGTCTATGTTGCCGTGGACCGTCGTGACCTTGGCTGATCACTCAGTTTTGGCTTTATTAATTTCGCCAACAGGGAGGATGCACAGAGAGCTATTAATAAGCTCAATGGTTATGGCTACGATAATCTCATTCTCAGAGTCGAATGGGCGACTCCTAGACAGACATAG___GCAAATACAAATGAATAACCCTAAATCCTATACACAAATCTCCTTTGCATGAATACCAGACAAAGGAGGTTCTTTGTGGGATTGAGGGTATACAAGACAGAGGGTTCTTTGTGGGATTTAGGGTAACTGCGGATGCTTTTCAGGTTCTGGATTTGATATTGTTGTGTTTTACCTTTTCTAGGGTTTTGTTTATCTTAATTTCATTTGAATGAACATATGCATAGTTTGTTGGTGGCAAGTTTTTTCCCCATGTTCCGTGTAACAGATCCAAATCTATTTCAAGTACTTTTATATGTTTACAGTCCCCAGTCTGTTTGCAAATTCAATCAAAATAATCAGCGAATGGTAAAGAAGCCCTAGAGCAGCAATATGTTTGTTCATGTTCTTGGGCTTTATCCTGCTTTTGTTGATTTCCTATTCTCTGAATATATTACATATTGTTTGCAATGAATTAAATAGGTAAATGAATTTTG

Fln Alignment:

sp_v1.1_unigene26905___TGSRLTMVSTEEILLERPKAPGAKEDDSRSXXXXXXXXXXXXXXXXXAVLMVCRICGKKGDHWTSKCPYKDLAPAAAEGLGLDKPPQAPDSXXXXXXXXXXXAYVPPSLRAGATVDRTSDASNMRRRNDENSVRVTNLSEDTREADLQELFKPFGHITRVYVAVDRRDLG*SLSFGFINFANREDAQRAINKLNGYGYDNLILRVEWATPRQT
A9NNT0_______________TGSRLTMVSTEEILLERPKAPGTKEDDPRSGGGDPLSAALAGAAKGGAVLMVCRICGKKGDHWTSKCPYKDLAPAAAEGLGLDKPPQAADSAAGSGAPGGKGAYVPPSLRAGATVDRTSDTSNMRRRNDENSVRVTNLSEDTREADLQELFKPFGHITRVYVAVDQR-TGMSRGFGFVNFANREDAQRAINKLNGYGYDNLILRVEWATPRQT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
697		10		90	0.90298
699	20	10	70		0.999998
700	10		90		0.90298
701	90			10	0.90298
702		90		10	0.90298
720		20	80		0.999996
721		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain