SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26899

Length: 1966 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26899
TTTTCTCTTAGTTATTTTCTCATCTGTTGTGTAGCTGAAGCTCTGGTCCTTGTGATGCTCTGTGTTTCCCTTGCTGCGAAGGAAAGAATCGTTCAGGTTTAACGAGCAAGCCCAGGATGGCTACTCAAGATGTCGAGATGAAGGACTCAACAGCCGCGGTCTCCAATTCTTCTGCGCCATCGCCTCCTCCGGTTCTTACGCATCTGAAGAATGTGGCGGCTTTGATCGAGAAGGGGGTGGTTACAAAGGAGGTACGTCTGATGATCCGCGCTATCCGTCACATTATGACTCTGAGGAGGAAGATTAAGGCCCCCCACGTGTTGGCGTTTCTGAAAAACATTCTTCCTCCTGGTTCCGAGGTCGCTTCTCGGCTCTTACCATATTTTCCCAAGGAAGACGAGAAGGATATGGAAGTTGACAGTCCTTCATCGACAAGTCAAACTGTTCCATCTAAGCACACCATTCTTCCTGAGCTGGAAATTTTTGCGTACTTGTTAGTGTTGATATTCTTGATTGACCAAAAACAGTACAATGAGGCCAAAAATTGCTCTTCAGCTGCAATTTCTAGATTGAAGCAATTGAACCGAAGAACACTAGATGTTTTGGCTGCTAGATTATACTTTTATTACTCATATAGCTATGAGTTGACAGATTCCCTTGTTGAAATCAGAGGTACACTTCTTGCGTTACATCGAACTGCAACACTGCGACATGATGAGCTGGGTCAGGAAACATTGCTGAATCTCCTGCTTCGAAATTACTTGCACTACAACCTTTATGACCAGGCAGAGAAATTACGATCCAAAGCTCCGCGGTTTGAAGCTCATTCAAATCAACAATTTTGTCGGTATTTGTACTACTTGGGTAGAATACGAACAATACAGCTAGAGTACACAGATGCAAAAGAGAGTCTATTACAAGCAGCTCGTAAAGCGCCAGCATCTGCTCGGGGCTTCCGTATTCAGTGCAATAAATGGGCTGCAATTGTTCGCCTGCTTCTTGGTGAAATTCCAGAGAGAACAACTTTCATGCAGAATGGCATGAAGAAAGCTTTGAGTCCCTACTTTGAGCTTACCAATGCTGTTCGTATAGGCGATTTGGAACTTTTCCGTAGTGTGGCGGATAAATATTCAAAGACATTCAGTGCAGATAGAACACACAATTTGATTGTACGGTTACGACACAATGTGATAAGAACTGGACTTCGGAATATCAGCATTTCTTATTCCCGAATTTCTTTGGTTGATGTTGCTGCTAAATTGAGGCTCAACTCAGCCACTCCCGTGGCAGATGCTCAGAGCATTGTTGCAAAAGCAATTCGCGATGGTGCAATTGATGCAACTATTGACCATGCAAATGGGTGGATGCTCTCTAAAGAGACTGGTGATGTCTATTCCACAAATGAGCCTCAACTCGCATTCAATTCTCGAATAGCTTTCTGTCTTAACATGCACAATGAAGCTGTGAGGGCTTTGCGATTCCCTCCTAATGCACACAAAAAGGAGAGAGAAAGTGCTGAGAAACGCAGAGAAAGGCAGCAGCAGGAGCAAGAACTTGCAAAGCATATTGCCGAGGAAGATGACGATGAATTTTAGATTAAGGTATTCAAAAACATCAATTTGCAGAGTTGTTTTTGGACAGAGAACTTTAGGATTTATTGCAAAAGTGCTTTACGGCATAACTTGTGGAAACAGAAGTAATGTTGTCACCTACATATTTCATGAACCTGTACTAGACAGCAATTATGTTCTTTGACACTGAAAAGCCTTCCCATTTTTCTGTAGTTAGCTTGGCTAGAGAAATTCAAGGTTTATGGATTCCCATGTTTTGCTTAACTTATTTATAGATTCAATAATGGCTTGTTTTATTATGTTTCTCTATACAAACTTTCTGATAAGTTTTATTGTATGGTTTTCTGGCCAAACATGTCCAGAATTATATTTCTACAGATAAAATATAAGTTTGT

Ace file of the UniGene sp_v1.1_unigene26899

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit S3, putative; K03033 26S proteasome regulatory subunit N3	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	26s proteasome regulatory subunit	-	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS7

Fln msg:

Fln protein: MATQDVEMKDSTAAVSNSSAPSPPPVLTHLKNVAALIEKGVVTKEVRLMIRAIRHIMTLRRKIKAPHVLAFLKNILPPGSEVASRLLPYFPKEDEKDMEVDSPSSTSQTVPSKHTILPELEIFAYLLVLIFLIDQKQYNEAKNCSSAAISRLKQLNRRTLDVLAARLYFYYSYSYELTDSLVEIRGTLLALHRTATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLYYLGRIRTIQLEYTDAKESLLQAARKAPASARGFRIQCNKWAAIVRLLLGEIPERTTFMQNGMKKALSPYFELTNAVRIGDLELFRSVADKYSKTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAAKLRLNSATPVADAQSIVAKAIRDGAIDATIDHANGWMLSKETGDVYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNAHKKERESAEKRRERQQQEQELAKHIAEEDDDEF*

Protein Length: 494

Fln nts: TTTTCTCTTAGTTATTTTCTCATCTGTTGTGTAGCTGAAGCTCTGGTCCTTGTGATGCTCTGTGTTTCCCTTGCTGCGAAGGAAAGAATCGTTCAGGTTTAACGAGCAAGCCCAGG_-_ATGGCTACTCAAGATGTCGAGATGAAGGACTCAACAGCCGCGGTCTCCAATTCTTCTGCGCCATCGCCTCCTCCGGTTCTTACGCATCTGAAGAATGTGGCGGCTTTGATCGAGAAGGGGGTGGTTACAAAGGAGGTACGTCTGATGATCCGCGCTATCCGTCACATTATGACTCTGAGGAGGAAGATTAAGGCCCCCCACGTGTTGGCGTTTCTGAAAAACATTCTTCCTCCTGGTTCCGAGGTCGCTTCTCGGCTCTTACCATATTTTCCCAAGGAAGACGAGAAGGATATGGAAGTTGACAGTCCTTCATCGACAAGTCAAACTGTTCCATCTAAGCACACCATTCTTCCTGAGCTGGAAATTTTTGCGTACTTGTTAGTGTTGATATTCTTGATTGACCAAAAACAGTACAATGAGGCCAAAAATTGCTCTTCAGCTGCAATTTCTAGATTGAAGCAATTGAACCGAAGAACACTAGATGTTTTGGCTGCTAGATTATACTTTTATTACTCATATAGCTATGAGTTGACAGATTCCCTTGTTGAAATCAGAGGTACACTTCTTGCGTTACATCGAACTGCAACACTGCGACATGATGAGCTGGGTCAGGAAACATTGCTGAATCTCCTGCTTCGAAATTACTTGCACTACAACCTTTATGACCAGGCAGAGAAATTACGATCCAAAGCTCCGCGGTTTGAAGCTCATTCAAATCAACAATTTTGTCGGTATTTGTACTACTTGGGTAGAATACGAACAATACAGCTAGAGTACACAGATGCAAAAGAGAGTCTATTACAAGCAGCTCGTAAAGCGCCAGCATCTGCTCGGGGCTTCCGTATTCAGTGCAATAAATGGGCTGCAATTGTTCGCCTGCTTCTTGGTGAAATTCCAGAGAGAACAACTTTCATGCAGAATGGCATGAAGAAAGCTTTGAGTCCCTACTTTGAGCTTACCAATGCTGTTCGTATAGGCGATTTGGAACTTTTCCGTAGTGTGGCGGATAAATATTCAAAGACATTCAGTGCAGATAGAACACACAATTTGATTGTACGGTTACGACACAATGTGATAAGAACTGGACTTCGGAATATCAGCATTTCTTATTCCCGAATTTCTTTGGTTGATGTTGCTGCTAAATTGAGGCTCAACTCAGCCACTCCCGTGGCAGATGCTCAGAGCATTGTTGCAAAAGCAATTCGCGATGGTGCAATTGATGCAACTATTGACCATGCAAATGGGTGGATGCTCTCTAAAGAGACTGGTGATGTCTATTCCACAAATGAGCCTCAACTCGCATTCAATTCTCGAATAGCTTTCTGTCTTAACATGCACAATGAAGCTGTGAGGGCTTTGCGATTCCCTCCTAATGCACACAAAAAGGAGAGAGAAAGTGCTGAGAAACGCAGAGAAAGGCAGCAGCAGGAGCAAGAACTTGCAAAGCATATTGCCGAGGAAGATGACGATGAATTTTAG___ATTAAGGTATTCAAAAACATCAATTTGCAGAGTTGTTTTTGGACAGAGAACTTTAGGATTTATTGCAAAAGTGCTTTACGGCATAACTTGTGGAAACAGAAGTAATGTTGTCACCTACATATTTCATGAACCTGTACTAGACAGCAATTATGTTCTTTGACACTGAAAAGCCTTCCCATTTTTCTGTAGTTAGCTTGGCTAGAGAAATTCAAGGTTTATGGATTCCCATGTTTTGCTTAACTTATTTATAGATTCAATAATGGCTTGTTTTATTATGTTTCTCTATACAAACTTTCTGATAAGTTTTATTGTATGGTTTTCTGGCCAAACATGTCCAGAATTATATTTCTACAGATAAAATATAAGTTTGT

Fln Alignment:

sp_v1.1_unigene26899___MATQDVEMKDSTXXXXXXXXXXXXXXLTHLKNVAALIEKGVVTKEVRLMIRAIRHIMTLRRKIKAPHVLAFLKNILPPGSEVASRLLPYFPKEDEKDMEVDSPSSTSQTVPSKHTILPELEIFAYLLVLIFLIDQKQYNEAKNCSSAAISRLKQLNRRTLDVLAARLYFYYSYSYELTDSLVEIRGXXXXXXXXXXXXXDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLYYLGRIRTIQLEYTDAKESLLQAARKAPASARGFRIQCNKWAAIVRLLLGEIPERTTFMQNGMKKALSPYFELTNAVRIGDLELFRSVADKYSKTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAAKLRLNSATPVADAQSIVAKAIRDGAIDATIDHANGWMLSKETGDVYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNAHXXXXXXXXXXXXXXXXXXXXXXHIAEEDDDEF
B8LKS7_______________MATQDVEMKDSAAAPSNSSAPSPPPVLTHLKNVSALIEKGVVTKEVRLMIRAIRHIMTLRRKIKASHVLAFLKQLLPPGSEVASRLLLYFPKEDEKDMEVDSPSSTSQTVPSKHTILPELEIFAYLLVLIFLIDQKQYNEAKNCSSAAISRLKQFNRRTLDVLAARLYFYYSYSYELTDSLVEIRGTLLALHRTATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLYYLGRIRTIQLEYTDAKESLLQAARKAPASARGFRIQCNKWAAIVRLLLGEIPERTTFMQNGMKKALSPYFELTNAVRIGDLDLFRSVADKYSKTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAAKLRLNSATPVADAQSIVAKAIRDGAIDATIDHANGWMLSKETGDVYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNAHKKERESAEKRRERQQQEQELAKHIAEEDDDEF

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
7	8			58	1.0
8	25			75	1.0
26	10			89	0.999919
27		10		89	0.999919
28		10	89		0.999919
32	89		10		0.999919
37	89			10	0.999919
38	89	10			0.999919
39	10		89		0.999919
49		42		57	1.0
294		12	87		0.992554
296	87			12	0.992554
297		12	87		0.992554
300	87			12	0.992554
303		12		87	0.992554
304		12		87	0.992554
305	85			14	0.993533
306	85			14	0.993533
310		85	14		0.993533
311		85		14	0.993533
313	14	85			0.993533
315	85			14	0.993533
316		71		14	0.984337
317	14		85		0.993533
358		44	55		1.0
363		55	44		1.0
364	44			55	1.0
365		44		55	1.0
368		55		44	1.0
373		55	44		1.0
375		44		55	1.0
379	88			11	0.923564
380		11		88	0.923564
1724	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain