SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26890

Length: 1676 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26890

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Adaptin ear-binding coat-associated protein 1 n=2 Tax=Andropogoneae RepID=B4FRD1_MAIZE	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Adaptin ear-binding coat-associated protein 1 NECAP-1	IPR012466	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWQ6

Fln msg:

Fln protein: MANDNQMDPEPEPREEGEEFGTAELVLFQTNECYVYMIPPRKSSASYRADEWDVNKWAWEGALRVVSKGEQCMIKLEDKSTGELYAQAFVRRDQPLPVEPVIDSSRYFVLCVEENFGGHTRHAFIGLGFRERPQAYDFQAALYDHVKYLNKKQAAEKMEQQYQTRSSVDYSLKEGQTLKLQLKNPYGRDSTKRSMFFEKEFDKLSLTDAREKKHLLPCLAPPPPPPTPSSPLPSPSATRGLEKVLTTGEMPPTLSFPTMISESITSTIGGGTTEELANKDDEKVQDSFEDDFGDFQKAD*

Protein Length: 301

Fln nts: GTGACCTTGGCTGTCACTCAATATTTGATGGCAGTGCTATTGAATTATGTAAGCGTAGTGTCCTGAGCAATCCAAATTGAATTGACAGGTTGGGTTCTTCGACTTCTTGAGATTTCTGTTCACATTGCAATTCGCAACAACCCTGCAAACGCATTTTGGTTAGGGAATTGCAGATTGTTTCATATTTTGTGAATCATTTTTCTTGGAAAAGGAATCGCAGATTGTTTTATGCTTTGTGGATCATTGACAAGAAAAGAAGACTAAGAATTGATTTGGGTTCCATACTTTTCCATTATCAAAATTGGACG_-_ATGGCAAACGATAATCAGATGGACCCAGAGCCTGAACCGAGAGAAGAAGGAGAGGAGTTTGGAACCGCAGAGCTGGTGTTATTTCAGACAAATGAATGCTATGTTTACATGATACCTCCAAGGAAGAGCTCAGCATCATACAGAGCGGATGAGTGGGATGTCAATAAGTGGGCATGGGAGGGGGCATTGCGGGTCGTCAGCAAAGGGGAGCAATGCATGATTAAGCTTGAGGATAAGAGCACAGGTGAATTATATGCCCAGGCATTTGTAAGGAGGGATCAACCACTTCCAGTTGAGCCTGTTATAGACAGCAGCAGATATTTTGTGCTTTGCGTTGAGGAGAACTTTGGTGGACATACAAGGCATGCTTTTATTGGACTAGGTTTTCGGGAGAGACCACAAGCATATGATTTTCAAGCTGCACTCTATGATCATGTCAAATATTTAAACAAGAAACAGGCCGCCGAGAAAATGGAGCAGCAGTACCAAACAAGATCATCTGTTGACTACAGTCTGAAGGAGGGTCAGACTTTAAAACTACAGTTGAAAAATCCATACGGAAGAGATAGCACCAAGAGGTCTATGTTTTTTGAGAAAGAATTTGACAAGCTTTCATTAACTGATGCAAGAGAGAAGAAGCATTTATTACCATGTCTCGCTCCACCACCGCCTCCACCAACACCATCATCACCATTGCCATCACCATCTGCAACTCGTGGATTGGAGAAAGTTTTGACCACAGGTGAAATGCCTCCGACATTGTCATTTCCTACTATGATATCAGAATCAATAACATCAACTATTGGTGGAGGTACAACGGAAGAACTGGCCAACAAAGATGATGAAAAGGTTCAGGACAGCTTTGAGGATGACTTTGGAGATTTCCAAAAGGCAGATTAA___AATTTAAATGTCTATTGGTTCCAAGTTGGAACAGCAACAAATGTGTTTCAGTGCTGCTGACATAGCTATGCTTGGCTTTTAAGACGTTATTGACACCAATGCTGTATAAAACATGGAGCTGATTTGGGGTTGTTCAGTATGATGTGTTGATGAGTCATACTGAATAGGAGAAATAAGTGTTCACTTCTCTACAAGTTAATCATTCAATGTATTAATTCTTGTAACTCATATCATACGATTGGTAGAAATTCTGCAAGCGTTTTCTATGTGCATAGAGAGTATACTTTCCTTTTAAACATTTAAGCCTGACCATCCATGAACAGGTATATTTGGTTGGTTATGTGCTTAACAGTGTTTTAGGCAATATGCCATGCCATTGAACTAGTGAACTCGAAGGATGAGAGAGTAGAGAAGATGTGAAATGTTGTTAACCTCGTTTCTATTTTATATATGTAGAAATATTGCTAT

Fln Alignment:

sp_v1.1_unigene26890___ELVLFQTNECYVYMIPPRKSSASYRADEWDVNKWAWEGALRVVSKGEQCMIKLEDKSTGELYAQAFV-RRDQPLPVEPVIDSSRYFVLCVEENFGGHTRHAFIGLGFRERPQAYDFQAALYDHVKYLNKKQAAEKMEQ----QYQTRSSVDYSLKEGQTLKLQLKN
A9NWQ6_______________EHTLLVVREVSVYKIPPRSTSGSYKCGEWLQSDKIWTGRLRVVSCKERCEIRLEDSNTGELFAACYVYPGHRETSVETVADSSRYFVLKIED---GRGKHAFIGLGFAERNEAFDFNVALSDHEKYIRREQEKEKGEENEDGKIEIHPAVNQRLKEGETIRINVKN

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
97		80		20	0.995493
358	40		60		1.0
641			10	90	0.90298
642		50		50	1.0
718		10		90	0.90298
719	90		10		0.90298
773		87	12		0.992554
803		90		10	0.90298
804	90		10		0.90298
805	90		10		0.90298
820		10		90	0.90298
880	71		28		1.0
881	14		85		0.993533
884	28	71			1.0
1085		83		16	0.994512
1102	83	16			0.994512
1104	83		16		0.994512
1106		83	16		0.994512
1110	83			16	0.994512
1111	83		16		0.994512
1315		7		92	0.999532
1320	92			7	0.999664
1329	92	7			0.999664
1333		7	92		0.999664
1403	47			52	1.0
1448		25		75	1.0
1534	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain