SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26855

Length: 2361 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26855
TCGTGACCTTGGCTGTCACTCAAATTGTGTGCATATGATGTAAATGGAACGGCGATCCTAACGACACTCGAAATAGATTCAATGCTGTTTCGCGGAGGAACATCAAAGACGCGAAGCCGCAGAGAGGAACAGAGGCTTTAGAGGCCCGCGTCTTATTTATCGTTACGACAGGCGTCCCATTCTCTTTCTTTGCTCTTGTGCCACCAACAGCCCCTCGAAAATATCCATTACCCGTGGGGTGCTTTGAGGGGAAGCAGAGCTGTTTGTGGATTTTATATGGCGACCAATGGCTTTGAAGTAGAAGAAGAGTTCCCCTACAATGGAGGAGGGGAGTCCCCTGCTCCCAGGCAGCAGGACTACGATTTTCTATCGCCCCGCCATTCCAACGACAATGGAGACTTTTACAAGGGTGATTCACGTGATTCTAATTGGGGGAAGGAAAGGAGTCATGATAAAGAAAAGAGTCGCGATAAAGATCGTGATAGAGATCGGGAAAGGAGGCATAAAGATGAAAGGGTGGAATCTAGTCATGATAGACATTCAAGAAGCGAGAGGGATAAAAGCCATGGTAGAGAAAGAAGTCATGATCAACATCGTCATAGGAGTCATGGAAGAAGTCGAGATCGGGATAGGCGCAGTTATGATCGTGAGCGTGGCCATGACCGTGGTCGTGAAAGACGACATAGACACAGGTCTCGGTCTCGTTCAAGTGGAAGGTCAGGGAGCTATTCTCGGAGACGTTCTCACTCAAGATCCATCTCGAGAGAGACTAGAAGAAAGCGCACATCTGGTTTTGACATGGTTCCGCCAGGTGCAGCCATAGTTGCAGGTGCTGGAGCTCCGGGCATAGTTCCTGGAGTTTCTCAACCAGTGCCTGGAGTGTTCCCGATGGTGCCATTTGCAAATGCACAGGCCACCAGACATGCCCGCAGAGTTTATGTTGGAGGCTTACCTCCTCTAGAAAATGAGCAGACTATTGCAACATTTTTCAGTCAAGTAATGGCTGCAATAGGAGGAAACACTGCTGGGCCAGGAGATGCTGTTGTGAATGTGTATATCAATCATGAAAAGAAATTTGCCTTTGTGGAGATGAGGACTGTTGAGGAGGCTAGCAATGCAATGGCTCTTGATGGGATACTATTTGAGGGTGCTCCAGTAAGAGTACGAAGGCCGACTGATTACAATCCCTCAATGGCAGCTGCCCTTGGTCCAAGTCAACCAAGTCCTCATCTTAACCTGGCAGCTGTAGGACTTACTCCAGGGGCAACTGGTGGTGCTGATGGGCCAGATAGAGTATTTGTTGGAGGCTTGCCTTACTATTTTACTGAGGCCCAGATAAAGGAGCTTTTAGAAGCCTTTGGGCCTCTTCGTGGATTTGATCTGGTAAAGGATCGAGATACAGGAAACTCCAAAGGCTATGGGTTCTGCGTCTATCAAGATCCAGGTGTTACAGATATTGCATGTGCCGCTCTAAACGGATTGAAGATGGGTGACAAGACCTTAACAGTGCGGCGTGCAACAGCCAGTGGCCAGGCAAGGCCTGATCAATATAGTCTCTTTCCGGAAGCACAGCAACCATTAACGTTTCAGAATCTGGCTTTGCAAGCAACAAATGGTACCAATATGGGATTACTAAGTGGAGCTGCAGAGTCTCCCACGAAGGTTCTTTGCCTTACTCAGGCAGTTAATCCAGATGAGTTACTAGATGATCAAGAATTTGAAGACATTTATGACGATATGAAGGAAGAATGTGGCAAACATGGTGAGATTACCAAATTAGTGATACCTCGCCCTAAATCAACTGGAGAAGAGGTTCCTGGTGTTGGAAAGGTGTTTGTGGAGTATGCCAATACACAAAGTTCAGCTAAGGCCAGGGCATCATTGCATGGAAGGAAATTTGGAGGCAATGTTGTTGTAGCTGTTTATTACCCAGAAGACAAGTTTTCTGCAGGACAATGGTGATTGATCTTGTAAAATAGCAGAAGCACTATCTCCATCTCTACTGATCTTTCTGGAATGCATTCACATGCATATTTTAAACAATATGAAGCAGAGGGTGGGGCTTGAGTACTGGAAAAGGAACCTGATCACCATGAGAAATATTCCAGTGGCTTTGTAGAGAACTGTTGTTCACAACGTATGCACTATCAATACAGGTTCCAGTATCTGCTAGTGATATTCTTTTGTACTGAAGATCTGTGAAAACTTCTGAAAACTTGGAATAGGCTTAAAGATTAATACATATATTTGTCCTGTATAGAGCAATATAACCAGAATGCAAGAATCAATTGTACTTCTTTTCGTTTGCTTTTTATTTGCGTAGTCCATATTCTTCAATGTACACTCTTAGGGATATTCGGA

Ace file of the UniGene sp_v1.1_unigene26855

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1777 multi-domain protein	-	-	1.0e-15	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	protein	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	78%
Blast2go	RNA recognition motif domain, eukaryote	IPR003954	-	78%
Blast2go	U2 snRNP auxilliary factor, large subunit, splicing factor	IPR006529	-	78%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1T0

Fln msg: your sequence is longer than subject: 562 - 347

Fln protein: MATNGFEVEEEFPYNGGGESPAPRQQDYDFLSPRHSNDNGDFYKGDSRDSNWGKERSHDKEKSRDKDRDRDRERRHKDERVESSHDRHSRSERDKSHGRERSHDQHRHRSHGRSRDRDRRSYDRERGHDRGRERRHRHRSRSRSSGRSGSYSRRRSHSRSISRETRRKRTSGFDMVPPGAAIVAGAGAPGIVPGVSQPVPGVFPMVPFANAQATRHARRVYVGGLPPLENEQTIATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGILFEGAPVRVRRPTDYNPSMAAALGPSQPSPHLNLAAVGLTPGATGGADGPDRVFVGGLPYYFTEAQIKELLEAFGPLRGFDLVKDRDTGNSKGYGFCVYQDPGVTDIACAALNGLKMGDKTLTVRRATASGQARPDQYSLFPEAQQPLTFQNLALQATNGTNMGLLSGAAESPTKVLCLTQAVNPDELLDDQEFEDIYDDMKEECGKHGEITKLVIPRPKSTGEEVPGVGKVFVEYANTQSSAKARASLHGRKFGGNVVVAVYYPEDKFSAGQW*

Protein Length: 563

Fln nts: TCGTGACCTTGGCTGTCACTCAAATTGTGTGCATATGATGTAAATGGAACGGCGATCCTAACGACACTCGAAATAGATTCAATGCTGTTTCGCGGAGGAACATCAAAGACGCGAAGCCGCAGAGAGGAACAGAGGCTTTAGAGGCCCGCGTCTTATTTATCGTTACGACAGGCGTCCCATTCTCTTTCTTTGCTCTTGTGCCACCAACAGCCCCTCGAAAATATCCATTACCCGTGGGGTGCTTTGAGGGGAAGCAGAGCTGTTTGTGGATTTTAT_-_ATGGCGACCAATGGCTTTGAAGTAGAAGAAGAGTTCCCCTACAATGGAGGAGGGGAGTCCCCTGCTCCCAGGCAGCAGGACTACGATTTTCTATCGCCCCGCCATTCCAACGACAATGGAGACTTTTACAAGGGTGATTCACGTGATTCTAATTGGGGGAAGGAAAGGAGTCATGATAAAGAAAAGAGTCGCGATAAAGATCGTGATAGAGATCGGGAAAGGAGGCATAAAGATGAAAGGGTGGAATCTAGTCATGATAGACATTCAAGAAGCGAGAGGGATAAAAGCCATGGTAGAGAAAGAAGTCATGATCAACATCGTCATAGGAGTCATGGAAGAAGTCGAGATCGGGATAGGCGCAGTTATGATCGTGAGCGTGGCCATGACCGTGGTCGTGAAAGACGACATAGACACAGGTCTCGGTCTCGTTCAAGTGGAAGGTCAGGGAGCTATTCTCGGAGACGTTCTCACTCAAGATCCATCTCGAGAGAGACTAGAAGAAAGCGCACATCTGGTTTTGACATGGTTCCGCCAGGTGCAGCCATAGTTGCAGGTGCTGGAGCTCCGGGCATAGTTCCTGGAGTTTCTCAACCAGTGCCTGGAGTGTTCCCGATGGTGCCATTTGCAAATGCACAGGCCACCAGACATGCCCGCAGAGTTTATGTTGGAGGCTTACCTCCTCTAGAAAATGAGCAGACTATTGCAACATTTTTCAGTCAAGTAATGGCTGCAATAGGAGGAAACACTGCTGGGCCAGGAGATGCTGTTGTGAATGTGTATATCAATCATGAAAAGAAATTTGCCTTTGTGGAGATGAGGACTGTTGAGGAGGCTAGCAATGCAATGGCTCTTGATGGGATACTATTTGAGGGTGCTCCAGTAAGAGTACGAAGGCCGACTGATTACAATCCCTCAATGGCAGCTGCCCTTGGTCCAAGTCAACCAAGTCCTCATCTTAACCTGGCAGCTGTAGGACTTACTCCAGGGGCAACTGGTGGTGCTGATGGGCCAGATAGAGTATTTGTTGGAGGCTTGCCTTACTATTTTACTGAGGCCCAGATAAAGGAGCTTTTAGAAGCCTTTGGGCCTCTTCGTGGATTTGATCTGGTAAAGGATCGAGATACAGGAAACTCCAAAGGCTATGGGTTCTGCGTCTATCAAGATCCAGGTGTTACAGATATTGCATGTGCCGCTCTAAACGGATTGAAGATGGGTGACAAGACCTTAACAGTGCGGCGTGCAACAGCCAGTGGCCAGGCAAGGCCTGATCAATATAGTCTCTTTCCGGAAGCACAGCAACCATTAACGTTTCAGAATCTGGCTTTGCAAGCAACAAATGGTACCAATATGGGATTACTAAGTGGAGCTGCAGAGTCTCCCACGAAGGTTCTTTGCCTTACTCAGGCAGTTAATCCAGATGAGTTACTAGATGATCAAGAATTTGAAGACATTTATGACGATATGAAGGAAGAATGTGGCAAACATGGTGAGATTACCAAATTAGTGATACCTCGCCCTAAATCAACTGGAGAAGAGGTTCCTGGTGTTGGAAAGGTGTTTGTGGAGTATGCCAATACACAAAGTTCAGCTAAGGCCAGGGCATCATTGCATGGAAGGAAATTTGGAGGCAATGTTGTTGTAGCTGTTTATTACCCAGAAGACAAGTTTTCTGCAGGACAATGGTGA___TTGATCTTGTAAAATAGCAGAAGCACTATCTCCATCTCTACTGATCTTTCTGGAATGCATTCACATGCATATTTTAAACAATATGAAGCAGAGGGTGGGGCTTGAGTACTGGAAAAGGAACCTGATCACCATGAGAAATATTCCAGTGGCTTTGTAGAGAACTGTTGTTCACAACGTATGCACTATCAATACAGGTTCCAGTATCTGCTAGTGATATTCTTTTGTACTGAAGATCTGTGAAAACTTCTGAAAACTTGGAATAGGCTTAAAGATTAATACATATATTTGTCCTGTATAGAGCAATATAACCAGAATGCAAGAATCAATTGTACTTCTTTTCGTTTGCTTTTTATTTGCGTAGTCCATATTCTTCAATGTACACTCTTAGGGATATTCGGA

Fln Alignment:

sp_v1.1_unigene26855___RVYVGGLPPLENEQTIATFFSQVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAMA-LDGILFEGAPVRVRRPTDYNPSMAAALGPSQPSPHLNLAAVGLTPGATGG-ADGPDRVFVGGLPYYFTEAQIKELLEAFGPLRGFDLVKDRDTGNSKGYGFCVYQDPGVTDIACAALNGLKMGDKTLTVRRA
A9P1T0_______________KLYVGNLPFDIDSEGLAKMFDE---------SGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEV--PRLQNGRSPAR------------SPSNFGGFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVA

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
820	88			11	0.923564
822	88	11			0.923564
824		11		88	0.923564
825	11			88	0.923564
827		88		11	0.923564
828	88		11		0.923564
829	11		88		0.923564
834	11			88	0.923564
838		11	88		0.923564
840	11			88	0.923564
842		88		11	0.923564
844	11		88		0.923564
848		11		88	0.923564
849	88			11	0.923564
851		11		88	0.923564
991	80		20		0.995493
1290		16		83	0.999991
1291	83			16	0.999991
1292		16	83		0.999991
1837	11		88		0.923564
2033	86		13		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain