SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26852

Length: 1613 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26852

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sar1-family small GTPase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RG76_PHYPA	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	gtp-binding protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	96%
Blast2go	cellular process	GO:0009987	Biological Process	96%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	96%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTP-binding protein domain	IPR005225	-	96%
Blast2go	Small GTPase superfamily, SAR1-type	IPR006687	-	96%
Blast2go	ADP-ribosylation factor	IPR006688	-	96%
Blast2go	Small GTPase superfamily, ARF/SAR type	IPR006689	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLN7

Fln msg:

Fln protein: MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK*

Protein Length: 195

Fln nts: GTGACCTTGGCTGTCACTCAATTTGTGTGTGAGGCTTTGCTCACAATGCCTTTTTCTCGGGATTTCAGAGCAGAATTCCTACGTGACTAGAAGCTCCGGGGACAGATCCGTTGTGGGTTCTTCGTCTTTGGAGCGTGGCTATTTATTCTCAGGGTCTCTGCAATTCTGGACCCTGAGCTTTCTAGGGTCGTTTTCGGCTTTGAAATACTTAATTCTAGGTCTGGTATATCAGAAAGTTCATCGTTTTCTCGATTTCTTTGGACTTCGGCTTATTCGACACGGTGAAAAGTCAATTGGGTTATTTGCAGATTATTGTTTTGGATCTGATTTCCCATTTGGGTATCCTTGTCTCTACGGAGTCATTCGCAGGTTCTGCTTAAGAAACTTTTGGAAGGCTCGAAG_-_ATGTTTCTGTTCGATTGGTTTTACAGCGTTCTTGCCACTCTAGGCCTGTGGCAGAAAGAGGCCAAGATTCTATTTCTTGGCCTAGATAATGCAGGCAAGACCACCTTGTTGCATATGTTGAAAGATGAGAGGTTAGTCCAACATCAACCTACTCAGTATCCTACATCTGAGGAACTGAGTATTGGTAAAATCAAGTTTAAGGCCTTCGATCTTGGAGGTCATCAAATTGCTAGAAGAGTCTGGAAAGACTATTATGCCAAGGTGGATGCCGTGGTCTATTTGGTTGATGCGGCAGATAAAGAGAGATTTGCAGAGTCAAAAAAGGAGCTCGATGCCTTACTTTCAGATGACTCTTTGACAAATGTGCCTTTCTTGATTTTAGGAAACAAGATTGATATTCCATATGCAGCATCTGAAGATGAGCTGCGCTATTACCTAGGCCTATCAAATTATACAACTGGCAAGGGCAAAGTGAATTTGGCAGATTCTAATGTTAGACCAATTGAGGTCTTCATGTGCAGTATCGTTAGGAAAATGGGTTATGGTGAAGGTATTAAATGGCTCTCTCAGTACATTAAATAG___GTTCACAAATGAACCGAGGAATCACCTTTTTGTTGTAATTAGTCAAGGGCAGAACATTTAGTTTAGATTGTGTTCTTTTGAAATTGGTTAGTTTGGGGGCGGTATTTGTAATGAATGTTGAATAAGATGCGAAACGAATAGATCAGGACAGGAGAAATATGATTGCTGAGTCAAATTTAATTCAGAGTGCAGAGACTGTTAGTTATTCCTGACAATTTGAAAATTTCCTGGATATCATAATCATGAAATTGATTGTTTTAAACCCATCAGAAAGACTATTTTATATGCGTCAGATATCATAACATCTATGTCAGGACCTTGGATATCATCCCCATGTTACTGCAATACAGGGGTATCAAATTTTTTCTTGATCTTTAGTGAAACTCTGGTTCCGGTGTCATCAGTTTTCATTCTTATCTTCTAGGCTCTGGTACATTTTTATCTTCTAGGCTGTATTTATTTCTTATTCCAGTCAACAGTAAATGCAGCGGCATGGATATTGTGAAAGGGCATTCTATGTTCATACTCCTAATTATTAAGCTACTGTGCCTTAACGGTTGCTGGTCCTCGCTCAATATGTAATTGTGGGAATGTCTCTTTACATTTGTGCCGCTATTCAACAATGTTGT

Fln Alignment:

sp_v1.1_unigene26852___MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK
A9NLN7_______________MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRAIEVFMCSIVRKMGYGEGIKWLSQYIK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
266	12	87			0.992554
277	87	12			0.992554
353		14		85	0.993533
355		85	14		0.993533
356			85	14	0.993533
361		85	14		0.993533
363		16		83	0.994512
364	16			83	0.994512
365		83	16		0.994512
368	80	20			0.995493
642		75		25	0.996473
885	96			3	0.991164
903	52		47		1.0
1031			27	72	1.0
1337			78	21	1.0
1344	72			27	1.0
1357		33		66	1.0
1384	55		44		1.0
1397	14	57		28	1.0
1398		14		85	0.993533
1399		66		33	1.0
1402		33		66	1.0
1405		33		66	1.0
1408	66		33		1.0
1410	66	33			1.0
1420	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain