SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26849

Length: 1978 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene26849
ATGGGGGGCCTGAAAAATCCTCTTTGTAAAACAAGGAAGGGACCAAAAACCCTCCTCACCCTATTACATAAACAGAAAGCTCTATCTTCCCCTTTGGGCCGACGGGGTTTCTAGCTTTTCTGGAACTGGGAGGCTTCAGCAACCCATATTTAGCAGCTCGGGTTTTGCCGGATTTAGCAGCTCTAAGGCCAAATCTAAAGTTGTTTCAGCGGAAGAAATGTCGGCCAGATATATGAACTTCTCGCCATCAGCGACACACTCCCCGCAGCTCCCTGGAATGCGTTCTGCAAGCATTGCCATAGCCGAGCATGACAAGTATCTTACTGAGCTGCTTGCTGAACGGCAAAAACTTAGTCCTTTTATGCAAGTTTTGCCACAATGCTGTCGGCTGCTGAACCAGGAAATAGTGCGGGTAACTGCATTGTTGGGGAATTCATCTTTTTTAGACCACAATGGGCCTGAGCATGGTAGCCCGTTGACTCACGGAGGATTACTTTCAAATGGAGGAGTGGACATGAATGGATGGGCTGCTTACCAATCAGAAAGGCTGAGCATGTTACAGGCATCCCCTCATGGTTGGCATGGAGCACCAGGTGGAGGTTCTAGTGGAATTATTGTTAAAAAAACCATCAGAGTTGAAGTTCCAGTTGACAAATATCCTAATTTTAACTTCGTTGGACGTCTCCTTGGTCCTAGAGGGAACTCACTAAAAAGAGTTGAAGCCGCTACTGAATGTCGAGTTCTAATCAGAGGACGGGGTTCAATTAAAGACCCTTCAAGGGAGGACATGATGAGGGACAAGCCAGGGTATGAGCATCTCAATGAGCCTCTGCACATCCTTGTGGAGGCAGAATTGCCTGCAAGTATCATAGATGCTCGCTTACTGCAAGCACGAGAGATACTAGAAGAATTGCTGAAACCTGTAGATGAGTCTCAAGATTTTTTCAAGAAGCAGCAATTAAGAGAGCTGGCCATTCTGAATGGTACATTGAGAGAAGATGGTTCGTCCATGGCTGGTTCAGTATCTCCATTCAACAGCAGTAACCTGGGAATGAAAAGGGCTAAAACCAGGGGGTAGATACCTGATGTATTGGCTTATGCCACACTCATTTTTTTGGGACTTCCTAGTTGTCTGGAAGAATTCCATTATTTTGTTGTTAGTTCTCATCCAAGTGGTCCGGTAGTATAGTTTAATGAGTATATTGATAGTCTTTCCAGATGTGTACCTCAATATAAAGATGTATGCTGCTGGTTGGTTATGAGGGGGTTTTAGGAACAGTGGTTTCTGAGGTGTGGGTTTTACCCTTTTTCCCGTACAAATCAAATGTGTAATATTTATTACTCTTGTATTATTATATCAAGAAGGCAGAGTGCAAGAAAATTTTTGTGATAAGCACTGGAGGAGTGGGATATTTGAATGTACAAATTTGGGATCATAATTTTCTTGAGAAGCAGTTTGTGAACCTTATTTCTTGCTGCATTCCCATAGCAGTTGTTCTGTATGCTTCTATGACGGGAAAAGATTCCAATAATGTACCCACCACCCATTCGACCAGTTAGTCTATTTAGTTAATATGCATTTTAAATAAAGTGTAAGGATAATTTATCCTAGTGTATAGATTGTATGTTTAGATTAATATTTGATTACCTGGCATACTCTGGTTACTTTTGTTGGCATTGTTCCATCTGGTCATGACATTCAAAGGAGAGTTAGAATTTGTGTTGGTGGACTCTGAAGTGTACAAGAAAGTTAGAGCAGTAATCTGAGCTCCCATCATTTTTATGGTGGCTTGTTTTACTAGAATTTACATGTCATTGCAACTGGGTCCTCTTATGTGCATGTTGGTTGGGCCTGTAAATACAGGTTGGCAAGCTTGCATCTTAAGCCGGAGGTCTGCAGTTCATATTTTGATGGGCCTTTGTGTGTTTACAGCCTCAAGTTTTGGGGGCACTGATGAATTCGGCACCATTTTGCCAA

Ace file of the UniGene sp_v1.1_unigene26849 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleic acid binding protein, putative	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEJ1

Fln msg:

Fln protein: MSARYMNFSPSATHSPQLPGMRSASIAIAEHDKYLTELLAERQKLSPFMQVLPQCCRLLNQEIVRVTALLGNSSFLDHNGPEHGSPLTHGGLLSNGGVDMNGWAAYQSERLSMLQASPHGWHGAPGGGSSGIIVKKTIRVEVPVDKYPNFNFVGRLLGPRGNSLKRVEAATECRVLIRGRGSIKDPSREDMMRDKPGYEHLNEPLHILVEAELPASIIDARLLQAREILEELLKPVDESQDFFKKQQLRELAILNGTLREDGSSMAGSVSPFNSSNLGMKRAKTRG*

Protein Length: 288

Fln nts: ATGGGGGGCCTGAAAAATCCTCTTTGTAAAACAAGGAAGGGACCAAAAACCCTCCTCACCCTATTACATAAACAGAAAGCTCTATCTTCCCCTTTGGGCCGACGGGGTTTCTAGCTTTTCTGGAACTGGGAGGCTTCAGCAACCCATATTTAGCAGCTCGGGTTTTGCCGGATTTAGCAGCTCTAAGGCCAAATCTAAAGTTGTTTCAGCGGAAGAA_-_ATGTCGGCCAGATATATGAACTTCTCGCCATCAGCGACACACTCCCCGCAGCTCCCTGGAATGCGTTCTGCAAGCATTGCCATAGCCGAGCATGACAAGTATCTTACTGAGCTGCTTGCTGAACGGCAAAAACTTAGTCCTTTTATGCAAGTTTTGCCACAATGCTGTCGGCTGCTGAACCAGGAAATAGTGCGGGTAACTGCATTGTTGGGGAATTCATCTTTTTTAGACCACAATGGGCCTGAGCATGGTAGCCCGTTGACTCACGGAGGATTACTTTCAAATGGAGGAGTGGACATGAATGGATGGGCTGCTTACCAATCAGAAAGGCTGAGCATGTTACAGGCATCCCCTCATGGTTGGCATGGAGCACCAGGTGGAGGTTCTAGTGGAATTATTGTTAAAAAAACCATCAGAGTTGAAGTTCCAGTTGACAAATATCCTAATTTTAACTTCGTTGGACGTCTCCTTGGTCCTAGAGGGAACTCACTAAAAAGAGTTGAAGCCGCTACTGAATGTCGAGTTCTAATCAGAGGACGGGGTTCAATTAAAGACCCTTCAAGGGAGGACATGATGAGGGACAAGCCAGGGTATGAGCATCTCAATGAGCCTCTGCACATCCTTGTGGAGGCAGAATTGCCTGCAAGTATCATAGATGCTCGCTTACTGCAAGCACGAGAGATACTAGAAGAATTGCTGAAACCTGTAGATGAGTCTCAAGATTTTTTCAAGAAGCAGCAATTAAGAGAGCTGGCCATTCTGAATGGTACATTGAGAGAAGATGGTTCGTCCATGGCTGGTTCAGTATCTCCATTCAACAGCAGTAACCTGGGAATGAAAAGGGCTAAAACCAGGGGGTAG___ATACCTGATGTATTGGCTTATGCCACACTCATTTTTTTGGGACTTCCTAGTTGTCTGGAAGAATTCCATTATTTTGTTGTTAGTTCTCATCCAAGTGGTCCGGTAGTATAGTTTAATGAGTATATTGATAGTCTTTCCAGATGTGTACCTCAATATAAAGATGTATGCTGCTGGTTGGTTATGAGGGGGTTTTAGGAACAGTGGTTTCTGAGGTGTGGGTTTTACCCTTTTTCCCGTACAAATCAAATGTGTAATATTTATTACTCTTGTATTATTATATCAAGAAGGCAGAGTGCAAGAAAATTTTTGTGATAAGCACTGGAGGAGTGGGATATTTGAATGTACAAATTTGGGATCATAATTTTCTTGAGAAGCAGTTTGTGAACCTTATTTCTTGCTGCATTCCCATAGCAGTTGTTCTGTATGCTTCTATGACGGGAAAAGATTCCAATAATGTACCCACCACCCATTCGACCAGTTAGTCTATTTAGTTAATATGCATTTTAAATAAAGTGTAAGGATAATTTATCCTAGTGTATAGATTGTATGTTTAGATTAATATTTGATTACCTGGCATACTCTGGTTACTTTTGTTGGCATTGTTCCATCTGGTCATGACATTCAAAGGAGAGTTAGAATTTGTGTTGGTGGACTCTGAAGTGTACAAGAAAGTTAGAGCAGTAATCTGAGCTCCCATCATTTTTATGGTGGCTTGTTTTACTAGAATTTACATGTCATTGCAACTGGGTCCTCTTATGTGCATGTTGGTTGGGCCTGTAAATACAGGTTGGCAAGCTTGCATCTTAAGCCGGAGGTCTGCAGTTCATATTTTGATGGGCCTTTGTGTGTTTACAGCCTCAAGTTTTGGGGGCACTGATGAATTCGGCACCATTTTGCCAA

Fln Alignment:

sp_v1.1_unigene26849___MSARYMNFSPSATHSPQLPGMRSASIAIAEHDKYLTELLAERQKLSPFMQVLPQCCRLLNQEIVRVTALLGNSSFLDHNGPEHGSPLTHGGLLSNGGVDMNGWAAYQSERLSMLQXXXXXXXXXXXXXXXGIIVKKTIRVEVPVDKYPNFNFVGRLLGPRGNSLKRVEAATECRVLIRGRGSIKDPSREDMMRDKPGYEHLNEPLHILVEAELPASIIDARLLQAREILEELLKPVDESQDFFKKQQLRELAILNGTLREDGSSMAGSVSPFNSSNLGMKRAKTRG
D5AEJ1_______________MSARYMNFSPSATHSPQLPGMRSVSIAMAEHDKYLTELLAERQKLSPFMQVLPQCCRLLNQEIVRVTALLGNSSFLDHNGPEHGSPLTHGGLLSNGGVDMNGWAAFHSERMSMVQASPHGWHGAPGGGSSGIIVKKTMRVEVPVDKYPNFNFVGRLLGPRGNSLKRVEAATECRVLIRGRGSIKDPSREDMMRDKPGYEHLNEPLHILVEAELPASIIDARLMQARDILEELLKPVDESQDFFKKQQLRELAILNGTLREDGSSMAGSVSPFNSSNLGMKRAKTRG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1274	11		88		0.923564
1276			11	77	0.968132
1901		77	5	16	1.0
1944	14		85		0.993533
1989	33		66		0.997452
1990			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain