SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26839

Length: 2062 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene26839
CTTTCACGACAACATTTTCTACACAATCGGGATCAAACCCTGTTTTCCATCACTCTGTATACAGGGATTGCATAATGTTCATGGTAATTACAGTATGCCAAACATGCCAACCTCTATATCTACCAACAATTCAGGATTTGGAGGACTTCCCTCTGGCGGGGTCCATCAACCCTCTGGGAGCCTTTCTACTGGACGTTTTGCATCAAACAACCTTCCAGTTGCTTTCTCCCAGTTATCACATGGTGGTTTGCATGGCCATACAGGGATAACAAACCGAGGAGGATCAGGAGTATCTCCTCTTACCAGCAATGCAGGGCCTAGGATAACAAGCTCTGCTGGGAACATTATGGGTGCAGCTGGAGCTGCTGGAGGCAATCTTGGGAGGACCATAAATCTTGGTGCTGGGCAAAGTCCTGTATCAGGATCGAGTCGCGCTGGAGCTGGAGGTATTGGGGGTACAAGGGCCTGGTAGACCGATGAACAGCGTTCCCCAACAAGCTTCAACGCAGGTGGTCTCTCTACTTGGAGGTACATTTTCAAGTTCTCTAGGAGCAGCTAATACTGGGCAAACCATCATGGGCAATGGCCATCAAGTTTCCGTCGTGACCTTGGCTGTCACTCACAATTCAAATGATAGTGCACCGTTTGACATCAATGACTTCCCTCAGTTAACTTCTCGCCCCAATTCTAGTGGAGGGGCACAAGGGCAGTTAGCTTCAATAAGAAAGCAAGGTCTTAGTGTTAATTCTCTTTCTCAACAAAACCAAGAGTTCAGCATTCAAAATGAAGACTTCCCAGCATTACCGGGTTTTAAAGGGAATGCGGATTTTGCAATCGATTTGCATCAGAAGGATCATCATGAAAATGCTTTAGCATTGATGCAGTCACACCATTATCAAATGGGGAGATCTGCTGGATTTTCTTTGGGAGGGTCATATGCTTCTCATCATCAGCAGCAACAACAACAAGAAATTCGATCTGGACTATCAACAAACAGTGCAGGAGGGTCATTTGCAGCTATTGCCAATTCTGCAGACCTTATGCATTTACATGGTTCTGATCTATTTCCATCTACGCATGGCCAAGCTTCATACCACTCTCAGGTTGTTCCTGGATTGAGGTCTGGGGTTCCTGGCATAGGCTCATATGATCATCTTCTTCAGCAGTATCATCATCATCATAATCACTCTCAGTTCCGACACGCACCATCAGTTAATCCACCATCGAAGGAGCATTTGCTGAAATCCATGCATGGGCTTCAAGGTGCTTCTGATAATTTTGGATTGCTAGGTCTTCTCAGTGTAATCAGGATGAGTGAACCTGATGTAACAACGCTAGCTTTGGGTATAGATCTTACGACTTTAGGATTAAATTTAAACTCAAGAGATAATCTGTATAGGACATTTGCCTCCCCTTGGGCTGATGGGCCTGCAAAAGGAGAGCCTGAGTATACGTTGCCACAATGCTATTCTCAACAAGCTCCTAGGTTGCAGCCAGGGTACTTTGCTAGGTTCAGTGAGGAGACTCTTTTCTATATATTTTACAGCATGCCAAAGGATGAAGCTCAGCTATTTGCTGCCAGTGAGCTGTGTCGAAAGGGTTGGTTCTTTGACAAGGAATCGGGTATGTGGTTAACACATGTACCGCAAATTGAGTCACTTGTCAAGACAAATACATATGAGCGGGGCTCTTATTACTTTTTTGATCCCAATATATGGGACTATGTACAGAAGGATAACCATGTGCTACATTATGAAATGATAGAGAAGAAACCCCGATTATCTCAAGCACCTGAATCATAGCAGGCATCTCAATCCGACAAATTGCAGCATCCTGCCCTGTAATCATAATAGATTGTAGAGCAATTCGTCAACTTTGTAACGTGTAGTTAGTCTCCTGAGATTACCAATTCTTTTGTACGCAAGCTATGCAATACTTCAACTGCTTGGATGTAGCAAGTTGAAATAAGTACTGCAAAAAGGTGCCTTGATTATTTAGAATTGTGAGCAAAGTTCTATGAGAGTTAATATCAGATGTTTAGGGTGCCTTCAAGTTATTTTGT

Ace file of the UniGene sp_v1.1_unigene26839

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CCR4-NOT transcription complex subunit, putative; K12605 CCR4-NOT transcription complex subunit 2	-	-	53%
FL-Next	sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	ccr4-not transcription complex	-	-	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FPW4

Fln msg: Separated hits, possible frame ERROR between 415 and 450,

Fln protein: FHDNIFYTIGIKPCFPSLCIQGLHNVHGNYSMPNMPTSISTNNSGFGGLPSGGVHQPSGSLSTGRFASNNLPVAFSQLSHGGLHGHTGITNRGGSGVSPLTSNAGPRITSSAGNIMGAAGAAGGNLGRTINLGAGQSxxxxxxxxxxxxxLGVQGPGRPMNSVPQQASTQVVSLLGGTFSSSLGAANTGQTIMGNGHQVSVVTLAVTHNSNDSAPFDINDFPQLTSRPNSSGGAQGQLASIRKQGLSVNSLSQQNQEFSIQNEDFPALPGFKGNADFAIDLHQKDHHENALALMQSHHYQMGRSAGFSLGGSYASHHQQQQQQEIRSGLSTNSAGGSFAAIANSADLMHLHGSDLFPSTHGQASYHSQVVPGLRSGVPGIGSYDHLLQQYHHHHNHSQFRHAPSVNPPSKEHLLKSMHGLQGASDNFGLLGLLSVIRMSEPDVTTLALGIDLTTLGLNLNSRDNLYRTFASPWADGPAKGEPEYTLPQCYSQQAPRLQPGYFARFSEETLFYIFYSMPKDEAQLFAASELCRKGWFFDKESGMWLTHVPQIESLVKTNTYERGSYYFFDPNIWDYVQKDNHVLHYEMIEKKPRLSQAPES*

Protein Length: 602

Fln nts: CTTTCACGACAACATTTTCTACACAATCGGGATCAAACCCTGTTTTCCATCACTCTGTATACAGGGATTGCATAATGTTCATGGTAATTACAGTATGCCAAACATGCCAACCTCTATATCTACCAACAATTCAGGATTTGGAGGACTTCCCTCTGGCGGGGTCCATCAACCCTCTGGGAGCCTTTCTACTGGACGTTTTGCATCAAACAACCTTCCAGTTGCTTTCTCCCAGTTATCACATGGTGGTTTGCATGGCCATACAGGGATAACAAACCGAGGAGGATCAGGAGTATCTCCTCTTACCAGCAATGCAGGGCCTAGGATAACAAGCTCTGCTGGGAACATTATGGGTGCAGCTGGAGCTGCTGGAGGCAATCTTGGGAGGACCATAAATCTTGGTGCTGGGCAAAGTCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGGGGGTACAAGGGCCTGGTAGACCGATGAACAGCGTTCCCCAACAAGCTTCAACGCAGGTGGTCTCTCTACTTGGAGGTACATTTTCAAGTTCTCTAGGAGCAGCTAATACTGGGCAAACCATCATGGGCAATGGCCATCAAGTTTCCGTCGTGACCTTGGCTGTCACTCACAATTCAAATGATAGTGCACCGTTTGACATCAATGACTTCCCTCAGTTAACTTCTCGCCCCAATTCTAGTGGAGGGGCACAAGGGCAGTTAGCTTCAATAAGAAAGCAAGGTCTTAGTGTTAATTCTCTTTCTCAACAAAACCAAGAGTTCAGCATTCAAAATGAAGACTTCCCAGCATTACCGGGTTTTAAAGGGAATGCGGATTTTGCAATCGATTTGCATCAGAAGGATCATCATGAAAATGCTTTAGCATTGATGCAGTCACACCATTATCAAATGGGGAGATCTGCTGGATTTTCTTTGGGAGGGTCATATGCTTCTCATCATCAGCAGCAACAACAACAAGAAATTCGATCTGGACTATCAACAAACAGTGCAGGAGGGTCATTTGCAGCTATTGCCAATTCTGCAGACCTTATGCATTTACATGGTTCTGATCTATTTCCATCTACGCATGGCCAAGCTTCATACCACTCTCAGGTTGTTCCTGGATTGAGGTCTGGGGTTCCTGGCATAGGCTCATATGATCATCTTCTTCAGCAGTATCATCATCATCATAATCACTCTCAGTTCCGACACGCACCATCAGTTAATCCACCATCGAAGGAGCATTTGCTGAAATCCATGCATGGGCTTCAAGGTGCTTCTGATAATTTTGGATTGCTAGGTCTTCTCAGTGTAATCAGGATGAGTGAACCTGATGTAACAACGCTAGCTTTGGGTATAGATCTTACGACTTTAGGATTAAATTTAAACTCAAGAGATAATCTGTATAGGACATTTGCCTCCCCTTGGGCTGATGGGCCTGCAAAAGGAGAGCCTGAGTATACGTTGCCACAATGCTATTCTCAACAAGCTCCTAGGTTGCAGCCAGGGTACTTTGCTAGGTTCAGTGAGGAGACTCTTTTCTATATATTTTACAGCATGCCAAAGGATGAAGCTCAGCTATTTGCTGCCAGTGAGCTGTGTCGAAAGGGTTGGTTCTTTGACAAGGAATCGGGTATGTGGTTAACACATGTACCGCAAATTGAGTCACTTGTCAAGACAAATACATATGAGCGGGGCTCTTATTACTTTTTTGATCCCAATATATGGGACTATGTACAGAAGGATAACCATGTGCTACATTATGAAATGATAGAGAAGAAACCCCGATTATCTCAAGCACCTGAATCATAGCAGGCATCTCAATCCGACAAATTGCAGCATCCTGCCCTGTAATCATAATAGATTGTAGAGCAATTCGTCAACTTTGTAACGTGTAGTTAGTCTCCTGAGATTACCAATTCTTTTGTACGCAAGCTATGCAATACTTCAACTGCTTGGATGTAGCAAGTTGAAATAAGTACTGCAAAAAGGTGCCTTGATTATTTAGAATTGTGAGCAAAGTTCTATGAGAGTTAATATCAGATGTTTAGGGTGCCTTCAAGTTATTTTGT

Fln Alignment:

sp_v1.1_unigene26839___IQGLHNVHGNYSMPNMPTSISTNNSGFGGLPSGGVHQPSGSLSTGRFASNNLPVAFSQLSHGGLHGHTGITNRG-------------------------------------GSGVSPLTSNAGPRITSSAGNIMXXXXXXXXNLGRTINLGAGQSPxxxxxxxxxxxxLGVQGPGRPMNSVPQQASTQVVXXXXXXXXXXXXAANTGQTIMGNGHQVSVVTLAVTHNSNDSAPFDIN-DFPQLTSRPNSSGGAQGQLASIRKQGLSVNSLSQQNQEFSIQNEDFPALPGFKG-NADFAIDLHQKDH-HENALALMQSHHYQMGRSAGFSLGGSYASHHXXXXXXEIRSGLSTNSAGGSFAAIANSADLMHLHGSDLFPSTHGQASYHSQVVPGLRSGVPGIGSYDXXXXXXXXXXXXSQF--RHAPSVNPPSKEHLLKSMHGLQGASDNFGLLGLLSVIRMSEPDVTTLALGIDLTTLGLNLNSRDNLYRTFASPWADGPAKGEPEYTLPQC-YSQQAPRLQPGYFARFSEETLFYIFYSMPKDEAQLFAASELCRKGWFFDKESGMWLTHVPQIESLVKTNTYERGSYYFFDPNIWDYVQKDNHVLHYEMIEKKPRL
Q9FPW4_______________LQGLHNIHGNYNVGNMQGTLTSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMV-----GGGNLGRNISSGGLSIPxxxxxxxxxxxxLNVQGQNRMMGGVLPQGS-QVMSMLGN-------SYHTGGGPLSQNHVQSVNNMMLSDHPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSLRKQGLGV-PLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNFSMGRSGGFNLGATYSSHRPQQQPQH------TSSTGG-------------LQGLGLRPLSSPNA-------------VSSIG-YDQLIQQYQQHQNQSQFPVQQMSSIN----QFRDSEMKSTQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVG--EPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
600	40		60		1.0
602		60	40		1.0
606	60			40	1.0
612		40	60		1.0
613	40	60			1.0
614	40			60	1.0
615	40		60		1.0
617		60	40		1.0
622	60			40	1.0
1072		80	20		0.995493
1073			20	80	0.995493
1074	80		20		0.995493
1158		83		16	0.994512
1183	88		11		0.923564
1190	11			88	0.923564
1249		11		88	0.923564
1449	11			88	0.923564
1615	90		10		0.90298
2017			45	54	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
957	968	CAA CAA CAA CAA	12
1168	1181	ATC ATC ATC ATC AT	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain