SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene26818

Length: 1657 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene26818

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nutrient reservoir, putative n=1 Tax=Ricinus communis RepID=B9SYN6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cupin family protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	76%
Blast2go	copper ion binding	GO:0005507	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	11-S seed storage protein, plant	IPR006044	-	76%
Blast2go	Cupin 1	IPR006045	-	76%
Blast2go	Cupin, RmlC-type	IPR011051	-	76%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE20

Fln msg:

Fln protein: MEAPPKRVLTPAEPKKILSSEGGSYYAWASSDLCMLAEAKVGAAKLLLNHRGLALPKYSDSSKVGYVLQGSGVAGILIPEAESERVVKIRKGDAIAVPMGVISWWFNDNPSEVLEILFLGDTSKAHRSGEFTDFYLMGCSNGLFNGFSKEFVSRAWDLAEDKVEHLLQSQSGTGIVQLKEGKNLPTPESEEGGEKLRLVFNCEEAKLDVDIKNGGRVVVLTSDYLPLLEEIGLGADLVKLDPAAMCSPGFSSDSAFQVTYIARGHGRVQVVGIDGVRVLETEVKAGFLFIVPRFFVVSKIAGNEGLEWFSIITTPKPIFCHLAGRTSVWKALSQEILTASFDVDEEIEQHFRSKRMQDAIFFPPSAN*

Protein Length: 369

Fln nts: TCACCAGCTTCCTGCACCAGTTTGTGTAGTTTTGCTTTTTTGGTTGTCTATTGCTTGTAATCTGATTTTAAAGAATTACATAAAGAAAAGAGAGA_-_ATGGAGGCCCCTCCCAAGAGAGTATTGACCCCGGCTGAGCCCAAGAAGATCCTGAGTTCAGAAGGAGGGTCTTATTACGCATGGGCAAGTTCAGATCTCTGCATGTTAGCAGAAGCCAAAGTTGGAGCCGCCAAGCTGCTTCTCAATCATCGTGGCCTGGCTTTGCCTAAGTATTCCGACTCTTCAAAAGTTGGCTATGTGCTTCAAGGATCTGGAGTTGCAGGGATACTTATTCCGGAGGCAGAGTCGGAACGAGTGGTGAAAATCCGCAAAGGGGATGCCATTGCAGTACCCATGGGAGTGATCAGTTGGTGGTTCAACGACAATCCTTCTGAGGTTTTGGAAATCCTCTTCCTCGGAGATACATCTAAGGCCCACCGATCGGGAGAGTTCACTGATTTCTACCTGATGGGTTGCTCGAATGGGCTGTTCAATGGGTTTAGCAAGGAATTCGTATCAAGGGCATGGGATCTGGCGGAAGATAAGGTGGAGCACCTGCTACAAAGCCAGTCCGGGACTGGAATTGTTCAGTTGAAGGAAGGAAAAAATCTACCGACTCCCGAGTCCGAAGAAGGAGGAGAGAAGCTAAGATTGGTTTTCAACTGCGAGGAAGCCAAATTGGACGTTGATATAAAAAATGGAGGTCGTGTGGTCGTTCTCACCAGCGATTATCTCCCACTGTTAGAGGAAATTGGGTTGGGGGCAGACCTCGTGAAGCTTGATCCGGCGGCAATGTGTTCGCCGGGATTCTCGTCGGACTCAGCCTTCCAAGTAACATACATAGCGAGAGGCCACGGGAGAGTTCAGGTGGTGGGAATCGATGGGGTGAGGGTGTTGGAAACAGAAGTTAAGGCTGGTTTTTTGTTTATCGTTCCCCGCTTCTTTGTAGTCTCCAAGATTGCTGGAAACGAGGGGCTTGAATGGTTTTCCATCATCACCACACCCAAGCCCATCTTCTGTCACCTGGCAGGGAGAACCTCCGTGTGGAAGGCTCTCTCGCAGGAGATTCTGACTGCCTCTTTTGATGTGGACGAAGAAATCGAGCAACACTTCCGCTCCAAACGAATGCAGGACGCCATCTTCTTCCCACCTTCCGCTAACTGA___ACTGGGCCGTATCATTATAGTATAGGATTGGAAGTTGGTTTTAGTTTTGCCTTTGTGATAATGAATCGGGGTTTGCTAGTAAGCTTATAGGGATAGGGAAGGGAAGGTCTTTTGTAAAGATATCCGTATCCTTTTTATTTGTAATCCGGTAATAAACTGATGGATGGTGATTTGGTGTTGTTCTGATTGAGATAAATATGAGATAAATATGTATCTTGGAATTTAATAAATTCAAATCCCAAATTCTTGAAGACCTTTGAAACTTAAATAGATGGCAACACGATAAATATGAGGGAATTAATGTCAAATTCTATGGTAATTCATAAGAGGCTTGATATGGAAATAGGAGACTGTAAAGTGTTGATGGTATTAAGGATATGCAGCATTTTTTTGGGACTACGAATCCTGGTTTTAGTGTAATAAAAGAAAGTCTAGTTGGATAACTACCATGTTAGGAT

Fln Alignment:

sp_v1.1_unigene26818___MEAPPKRVLTPAEPKKILSSEGGSYYAWASSDLCMLAEAKVGAAKLLLNHRGLALPKYSDSSKVGYVLQGSGVAGILIPEAESERVVKIRKGDAIAVPMGVISWWFNDNPSEVLEILFLGDTSKAHRSGEFTDFYLMGCSNGLFNGFSKEFVSRAWDLAEDKVEHLLQSQSGTGIVQLKEGKNLPTPESEE---GGEKLRLVFNCEEAKLDVDIKNGGRVVVLTSDYLPLLEEIGLGADLVKLDPAAMCSPGFSSDSAFQVTYIARGHGRVQVVGIDGVRVLETEVKAGFLFIVPRFFVVSKIAGNEGLEWFSIITTPKPIFCHLAGRTSVWKALSQEILTASFDVDEEIEQHFRSKRMQDAIFFPPSAN
D5AE20_______________MEAPPKRVLTPTEPKKILSSEGGSYYAWASSDLCMLAEAKVGAAKLLLNYRGLALPKYSDSSKVCYVLQGSGVAGILVPEAESERVVKIRKGDAIAVPMGVISWWFNDNPSEVLEILFLGDTSKAHRSGEFTDFYLMGGSNGLFHGFSKEFVSRAWDLEEDKVEHLLKSQSGTGIVKLKEGKSLPTPESQEEEKDGDKPRLVFNCEEAELDVDVKNGGRVVVLTGDYLPMLEQIGLGADLVKLDPAAMCSPGFSSDSAFQVTYIARGHGRVQVVGIDGVRVLEVEVKAGFLFIVPRFFVVSKIAGNEGLEWFSIITTPKPIFCHLAGRTSVWKALSKEILTASFDVDEEMEQHFRSKRTQDAIFFPPPSN

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
963	77		22		0.999999
1447		15		84	1.0
1463		10		90	0.90298
1501	16			83	0.994512
1547	80	20			0.995493
1548	20		80		0.995493
1549	80	20			0.995493
1556	80			20	0.995493
1571	80		20		0.995493
1586		33		66	0.997452
1598	66	33			0.997452
1599		66		33	0.997452
1605		66		33	0.997452
1615		33		66	0.997452
1632		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain